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  • Brero, A.  (4)
  • Cremer, T.  (4)
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  • 1
    In: Reproduction, Fertility and Development, CSIRO Publishing, Vol. 26, No. 1 ( 2014), p. 147-
    Abstract: Development of mammalian pre-implantation embryos provides an excellent model to explore interactions of nuclear organisation and nuclear functions. Based on light optical sectioning with confocal laser scanning microscopy and structured illumination microscopy, we performed a quantitative three-dimensional image analysis of nuclei in early bovine embryos generated by in vitro fertilization (IVF) and somatic cell nuclear transfer (SCNT) of bovine fibroblast nuclei. The same sequence of changes was observed in nuclei of both IVF and SCNT embryos during embryonic genome activation (EGA) is that typically achieved in embryos between 8 and 16 cells. In both pre-EGA IVF and SCNT embryos, chromosome territories (CT) were assembled as spatially distinct entities at the nuclear periphery, whereas the nuclear interior was typically occupied by a mostly chromatin free lacuna enriched with splicing factors. Detection of H3K4m3 demonstrates the presence of transcriptionally competent chromatin before EGA, which was correlated with large-scale movements of CT into the nuclear interior and a several-fold decrease of nuclear volumes. Post-EGA nuclei are characterised by a conventional nuclear architecture with chromatin distributed throughout the nuclear space, heterochromatin enriched with histone markers for transcriptionally silent chromatin beneath the nuclear lamina and around nucleoli, as well as heterochromatin clusters and chromocenters throughout the nuclear interior. Pre- and post-EGA nuclei were recorded with the superior resolution of structured illumination microscopy to allow a quantitative analysis of the nuclear topography of H3K4me3 and RNAP II signals. These signals were highly significantly enriched in the perichromatin region (PR) surrounding the compact, transcriptionally silent interior of megabase-sized chromatin domains, which form the basic structural units of CT. The PR is in direct contact with interchromatin compartment (IC) channels starting at nuclear pores, permeating the nuclear space and harboring nuclear bodies in IC lacunas. Our findings support a model for the functional nuclear architecture based on spatially distinct, but co-aligned three-dimensional networks of an active and an inactive nuclear compartment. The active nuclear compartment is built up from the structurally and functionally interacting IC and PR, whereas the inactive nuclear compartment consists of the compact, transcriptionally silent core of chromatin domain clusters. This work is supported by the DFG (ZA 425/1-3, CR 59/29-2).
    Type of Medium: Online Resource
    ISSN: 1031-3613
    Language: English
    Publisher: CSIRO Publishing
    Publication Date: 2014
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    CSIRO Publishing ; 2009
    In:  Reproduction, Fertility and Development Vol. 21, No. 1 ( 2009), p. 118-
    In: Reproduction, Fertility and Development, CSIRO Publishing, Vol. 21, No. 1 ( 2009), p. 118-
    Abstract: Reprogramming of nuclei after somatic cell nuclear transfer is a crucial process to reset the expression profile of the donor cell to that of a developing embryo. Reprogramming affects the epigenome of the donor nucleus, which is the complete set of epigenetic determinants that establishes and maintains a given transcriptome. These epigenetic determinants include e.g. DNA methylation, modifications of histone tails, histone variants, and other chromatin components. A less well characterized level of epigenetic gene regulation is the spatial higher order chromatin organization. In somatic cells chromosomes are organized as individual entities called chromosome territories (CTs), which localize according to their gene density with gene-rich chromosomes being in the nuclear interior, gene-poor ones at the nuclear periphery. We have shown previously that this gene density related distribution is established during major genome activation (MGA) in bovine in vitro fertilized (IVF) embryos, while embryos up to the 8-cell stage do not show a difference in their CT localization. In the present study, we investigated whether the gene density related distribution of chromosomes present in bovine fibroblasts is reprogrammed after nuclear transfer (NT), i.e. erased to restore the situation found in IVF embryos. Moreover, we analyzed if a gene density related CT arrangement is re-established at the same time point as in IVF embryos, i.e. during MGA. Therefore we analyzed the nuclear distribution of bovine chromosome 19 (19 genes Mb–1) and 20 (5 genes Mb–1) in one-, 2- and 4-cell NT embryos as pre-MGA stages and in embryos with 10–20 nuclei cells–1, representing embryos during MGA. CTs were visualized via a recently developed protocol utilizing fluorescence in situ hybridization (FISH) on three dimensionally preserved embryos. In 1- and 2-cell embryos we could not detect a gene density related CT distribution arguing for a rapid reprogramming, i.e. erasure of the positional information previously present in the donor nuclei. Surprisingly, we observed a precocious establishment of a gene density related distribution already at the 4-cell stage that became more pronounced in 10–20-cell embryos, when this specific CT distribution is established in IVF embryos. We conclude that the spatial arrangement of chromosomes is an epigenetic parameter that is rapidly reprogrammed upon nuclear transfer of a somatic nucleus, exposed to the oocyte cytoplasm. Moreover, the gene density related positioning of chromosomes in bovine NT embryos is re-established earlier than in IVF embryos, suggesting a possible involvement in early developmental failures of NT embryos. Funded by the Deutsche Forschungsgemeinschaft (ZA 425/1-2, CR 59/26-1).
    Type of Medium: Online Resource
    ISSN: 1031-3613
    Language: English
    Publisher: CSIRO Publishing
    Publication Date: 2009
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    CSIRO Publishing ; 2008
    In:  Reproduction, Fertility and Development Vol. 20, No. 1 ( 2008), p. 134-
    In: Reproduction, Fertility and Development, CSIRO Publishing, Vol. 20, No. 1 ( 2008), p. 134-
    Abstract: In interphase nuclei of higher eukaryotes, the genome is organized within discrete chromosome territories (CT). These CT are arranged in a nonrandom fashion depending on cell type, species, and cell cycle stage. Gene-rich CT locate more internally in the nucleus, whereas gene-poor ones are found more peripherally. So far, CT have been investigated mainly in cultured cells and to some extent in tissues, yet little is known about the origin and fate of CT during early development. To gain insights into the very early organization of CT in embryos, we developed a fluorescence in situ hybridization protocol that yields optimal results with 3 dimensionally preserved bovine embryos. Using this protocol, we investigated CT of bovine chromosome 19 and 20. These chromosomes represent the gene-richest and gene-poorest chromosomes, according to the number of annotated genes at the Ensembl database (www.ensembl.org). We could confirm a gene density-related radial nuclear distribution in bovine fibroblasts and lymphocytes with CT 19 being more interior than CT 20. Because cell cycle-dependent effects were not expected in view of published data in other species, we did not consider the cell cycle stage of the investigated specimen. In early bovine embryos generated by in vitro fertilization, we demonstrated the existence of nonoverlapping CT already in zygotic pronuclei. In day 3 embryos, but interestingly not in day 2 embryos, a gene density-related radial distribution of CT 19 and 20 was observed. Because these stages represent a transition stage during which the embryonic genome is activated, our results indicate a correlation between genome activation and changes of higher order nuclear organization. We are currently investigating the question whether transcription is a prerequisite for the establishment of a gene density-related chromosome positioning, as well as how reprogramming after nuclear transfer affects CT distribution of somatic donor nuclei. The present work is supported by the Deutsche Forschungsgemeinschaft (ZA 425/1).
    Type of Medium: Online Resource
    ISSN: 1031-3613
    Language: English
    Publisher: CSIRO Publishing
    Publication Date: 2008
    SSG: 12
    Library Location Call Number Volume/Issue/Year Availability
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  • 4
    Online Resource
    Online Resource
    CSIRO Publishing ; 2007
    In:  Reproduction, Fertility and Development Vol. 19, No. 1 ( 2007), p. 188-
    In: Reproduction, Fertility and Development, CSIRO Publishing, Vol. 19, No. 1 ( 2007), p. 188-
    Abstract: DNA double-strand breaks (DSBs) are considered the most severe type of DNA lesions, because such lesions, if unrepaired, lead to a loss of genome integrity. Soon after induction of DSBs, chromatin surrounding the damage is modified by phosphorylation of the histone variant H2AX, generating so-called γH2AX, which is a hallmark of DSBs (Takahashi et al. 2005 Cancer Lett. 229, 171–179). γH2AX appears to be a signal for the recruitment of proteins constituting the DNA repair machinery. Depending on the type of damage and the cell cycle stage of the affected cell, DSBs are repaired either by nonhomologous end joining or by homologous recombination using the sister chromatid DNA as template (Hoeijmakers 2001 Nature 411, 366–374). We used immunofluorescence to analyze chromatin composition during bovine development and found γH2AX foci in both male and female pronuclei of IVF embryos. The number and size of foci varied considerably between embryos and between the male and female pronuclei. To test whether the observed γH2AX foci represented sites of active DNA repair, we co-stained IVF zygotes for γH2AX and 3 different proteins involved in homologous recombination repair of DSBs: NBS1 (phosphorylated at amino acid serine 343), 53BP1, and Rad51. We found co-localization of γH2AX foci with phosphorylated NBS1 as well as with Rad51 but did not observe the presence of 53BP1 at γH2AX foci in IVF zygotes. Our finding shows the presence of DSBs in IVF zygotes and suggests the capability of homologous recombination repair. The lack of 53BP1, a component of homologous recombination repair, which usually co-localizes with γH2AX foci at exogenously induced DSBs (Schultz et al. 2000 J. Cell. Biol. 151, 1381–1390) poses the possibility that the mechanism present in early embryos differs substantially from that involved in DNA repair of DSBs in somatic cells.
    Type of Medium: Online Resource
    ISSN: 1031-3613
    Language: English
    Publisher: CSIRO Publishing
    Publication Date: 2007
    SSG: 12
    Library Location Call Number Volume/Issue/Year Availability
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