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  • Wiley  (5)
  • Pohlmeier, Andreas  (5)
  • English  (5)
  • 1
    In: Vadose Zone Journal, Wiley, Vol. 12, No. 1 ( 2013-02), p. 1-9
    Abstract: An automated method for root system architecture reconstruction from three‐dimensional volume data sets obtained from magnetic resonance imaging (MRI) was developed and validated with a three‐dimensional semimanual reconstruction using virtual reality and a two‐dimensional reconstruction using SmartRoot. It was tested on the basis of an MRI image of a 25‐d‐old lupin ( Lupinus albus L.) grown in natural sand with a resolution of 0.39 by 0.39 by 1.1 mm. The automated reconstruction algorithm was inspired by methods for blood vessel detection in MRI images. It describes the root system by a hierarchical network of nodes, which are connected by segments of defined length and thickness, and also allows the calculation of root parameter profiles such as root length, surface, and apex density The obtained root system architecture (RSA) varied in number of branches, segments, and connectivity of the segments but did not vary in the average diameter of the segments (0.137 cm for semimanual and 0.143 cm for automatic RSA), total root surface (127 cm 2 for semimanual and 124 cm 2 for automatic RSA), total root length (293 cm for semimanual and 282 cm for automatic RSA), and total root volume (4.7 cm 3 for semimanual and 4.7 cm 3 for automatic RSA). The difference in performance of the automated and semimanual reconstructions was checked by using the root system as input for water uptake modeling with the Doussan model. Both systems worked well and allowed for continuous water flow. Slight differences in the connectivity appeared to be leading to locally different water flow velocities, which were 30% smaller for the semimanual method.
    Type of Medium: Online Resource
    ISSN: 1539-1663 , 1539-1663
    Language: English
    Publisher: Wiley
    Publication Date: 2013
    detail.hit.zdb_id: 2088189-7
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  • 2
    Online Resource
    Online Resource
    Wiley ; 2019
    In:  Vadose Zone Journal Vol. 18, No. 1 ( 2019-01), p. 1-13
    In: Vadose Zone Journal, Wiley, Vol. 18, No. 1 ( 2019-01), p. 1-13
    Abstract: Transversal relaxation time spectra were a good proxy to determine pore size distribution. Chitosan provides more degradable C to the soil microbial community than Arabic gum. The water retention curve showed that 10 g Arabic gum kg −1 soil decreased plant‐available water. The same amount of chitosan increased available water content compared with the reference soil. The pore size distribution (PSD) of biopolymeric‐amended soils is rarely investigated due to difficulties in its quantification using classical methods. In this study, we analyzed the impact of biopolymeric soil amendments on the PSD of a dryland loamy soil based on its physical and biological properties using a completely randomized design with four treatments consisting of two different dosages (10 and 5 g kg −1 ) of two different biopolymers, (chitosan [CH] and Arabic gum [AG] ) plus a reference soil. To determine the effects of CH and AG on the PSD, nuclear magnetic resonance relaxometry (NMRR) measurements were used to determine the longitudinal ( T 1 ) and transversal ( T 2 ) relaxation times. A set of soil structure–related characteristics was also determined in the laboratory. The results revealed that T 2 spectra provided a good proxy to determine the PSD, showing good agreement between the PSD from T 2 spectra and that calculated from the water retention curve (WRC) ( R 2 〉 0.78; RMSE 〈 1.38 μm). The application of CH also increased the zeta potential of the soil to −18.5 mV, compared with −20 mV obtained for the reference soil. The WRC measurements revealed that AG decreased the available water content for plant use compared with the reference soil, whereas CH increased the available water in comparison to the reference soil. Considering the parameters of the van Genuchten model, the application of AG and CH mainly affected the parameter α, confirming the dominant changes in macropores. This finding was confirmed by NMRR relaxation spectra. Furthermore, the application of CH and AG stimulated the microbial activity of the amended soil, leading to an increase in soil respiration.
    Type of Medium: Online Resource
    ISSN: 1539-1663 , 1539-1663
    Language: English
    Publisher: Wiley
    Publication Date: 2019
    detail.hit.zdb_id: 2088189-7
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  • 3
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    Online Resource
    Wiley ; 2016
    In:  Magnetic Resonance in Chemistry Vol. 54, No. 12 ( 2016-12), p. 975-984
    In: Magnetic Resonance in Chemistry, Wiley, Vol. 54, No. 12 ( 2016-12), p. 975-984
    Abstract: Magnetic impurities are ubiquitous in natural porous media such as sand and soil. They generate internal magnetic field gradients because of increased magnetic susceptibility differences between solid and liquid phase in the pore space and because of the presence of magnetic centers. These internal gradients accelerate NMR relaxation rates and thus might limit the possibility of pore space characterization using NMR. In this study, we investigate the effects of coating the surface of natural sands by the antiferromagnetic iron oxyhydroxide goethite on NMR relaxation and diffusion properties. We found a non‐quadratic dependence of the relaxation time distributions on the echo time indicating that the relaxation experiments were not performed in the fast diffusion limit, while the weak dependence on the external magnetic field strength is explained by the preponderance of the surface relaxation over the effect of diffusion in internal gradients. The surface to volume ratio of the pore space, determined by NMR diffusimetry ((S/V) NMR ) remains approximately constant, whereas the same quantity, determined from gas adsorption ((S/V) BET ) increases proportional to the coating density. This is because gas adsorption measures surface roughness on sub‐nanometer scale, whereas NMR diffusimetry averages over structures smaller than few microns. This has consequences for the calculation of the surface relaxivities. The usage of the (S/V) NMR leads to constant values, whereas the usage of (S/V) BET leads to apparently decreasing relaxivities with increasing coating, which is unrealistic. Copyright © 2016 John Wiley & Sons, Ltd.
    Type of Medium: Online Resource
    ISSN: 0749-1581 , 1097-458X
    URL: Issue
    RVK:
    Language: English
    Publisher: Wiley
    Publication Date: 2016
    detail.hit.zdb_id: 1475029-6
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  • 4
    In: Vadose Zone Journal, Wiley, Vol. 17, No. 1 ( 2018-01), p. 1-15
    Abstract: Evaporative drying of soil columns was monitored in high resolution using NMR. Soil moisture data were used for validating a water, vapor, and heat flow model. The Richards approach was insufficient under Stage II conditions. NMR is a feasible technique for soil moisture measurements under Stage II conditions. Evaporation from bare soil surfaces can be restrained to a great extent with the development of a dry layer at the soil surface where capillary hydraulic conductance ceases and water flow proceeds only by gas phase transport. Model calculations and preliminary experiments with model porous media have shown that this surface layer can be very thin. An accurate characterization of these processes is required, which is provided by noninvasive magnetic resonance (MR) methods. The evaporative drying of a silt loam and a sandy loam was monitored at high spatial resolution in laboratory experiments. The MR data were used to assess the performance of two numerical models: (i) the Richards equation, which considers isothermal liquid water flow, and (ii) a coupled soil water, heat, and vapor flow numerical model. The experimental results reveal two distinct drying regimes for both soil types where, at the onset of the second evaporation stage, a dry surface zone developed with increasing thickness over time. This layer revealed that water loss inside the soil coincided with a relatively low evaporation rate as the liquid continuity to the soil surface vanished. The modeling results clearly demonstrated the need to consider heat and vapor flow. It was shown, as a proof of principle, that MR relaxation time spectra may serve as a proxy to follow desaturation processes where spatially resolved transverse relaxation can reveal a secondary evaporation front.
    Type of Medium: Online Resource
    ISSN: 1539-1663 , 1539-1663
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2088189-7
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  • 5
    In: Vadose Zone Journal, Wiley, Vol. 18, No. 1 ( 2019), p. 0-
    Type of Medium: Online Resource
    ISSN: 1539-1663
    Language: English
    Publisher: Wiley
    Publication Date: 2019
    detail.hit.zdb_id: 2088189-7
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