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  • 1
    In: European Journal of Soil Science, Wiley, Vol. 73, No. 1 ( 2022-01)
    Abstract: Soil functions, including climate regulation and the cycling of water and nutrients, are of central importance for a number of environmental issues of great societal concern. To understand and manage these functions, it is crucial to be able to quantify the structure of soils, now increasingly referred to as their “architecture,” as it constraints the physical, chemical and biological processes in soils. This quantification was traditionally approached from two different angles, one focused on aggregates of the solid phase, and the other on the pore space. The recent development of sophisticated, non‐disturbing imaging techniques has led to significant progress in the description of soil architecture, in terms of both the pore space and the spatial configuration of mineral and organic materials. We now have direct access to virtually all aspects of soil architecture. In the present article, we review how this affects the perception of soil architecture specifically when trying to describe the functions of soils. A key conclusion of our analysis is that soil architecture, in that context, imperatively needs to be explored in its natural state, with as little disturbance as possible. The same requirement applies to the key processes taking place in the hierarchical soil pore network, including those contributing to the emergence of a heterogeneous organo‐mineral soil matrix by various mixing processes, such as bioturbation, diffusion, microbial metabolism and organo‐mineral interactions. Artificially isolated aggregates are fundamentally inappropriate for deriving conclusions about the functioning of an intact soil. To fully account for soil functions, we argue that a holistic approach that centres on the pore space is mandatory while the dismantlement of soils into chunks may still be carried out to study the binding of soil solid components. In the future, significant progress is expected along this holistic direction, as new, advanced technologies become available. Highlights We highlight the crucial importance of the temporal dynamics of soil architecture for biological activity and carbon turnover. We reconcile controversial concepts relative to how soil architecture is formed and reshaped with time. Soil is demonstrated to be a heterogeneous porous matrix and not an assembly of aggregates. Biological and physical mixing processes are key for the formation and dynamics of soil architecture.
    Type of Medium: Online Resource
    ISSN: 1351-0754 , 1365-2389
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 240830-2
    detail.hit.zdb_id: 2020243-X
    detail.hit.zdb_id: 1191614-X
    SSG: 13
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  • 2
    In: Global Change Biology, Wiley, Vol. 25, No. 7 ( 2019-07), p. 2205-2208
    Type of Medium: Online Resource
    ISSN: 1354-1013 , 1365-2486
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2019
    detail.hit.zdb_id: 2020313-5
    SSG: 12
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  • 3
    In: European Journal of Soil Science, Wiley, Vol. 73, No. 1 ( 2022-01)
    Abstract: The microscale physical characteristics of microbial habitats considerably affect the decomposition of organic matter in soils. One of the challenges is to identify microheterogeneities in soil that can explain the extent of carbon mineralization. The aim of this study was therefore to identify descriptors of μm‐scale soil heterogeneity that can explain CO 2 fluxes obtained at the mm scale. A suite of methods and models that visualize soil heterogeneity at scales relevant to microorganisms has been developed over the last decade. Among the existing 3D models that simulate microbial activity in soils, Mosaic is able to simulate, within a short computation time, the microbial degradation of organic matter at the microhabitat scale in soil using real 3D images of soil porosity. Our approach was to generate scenarios of carbon mineralization for various microscale environmental conditions and determine how the descriptors of soil structure could explain CO 2 evolution. First, we verified that the simulated diffusion of solutes in the soil samples obtained with Mosaic were the same as those obtained using the same parameter set from a robust 3D model based on a lattice Boltzmann approach. Then, we ran scenarios considering different soil pore architectures, water saturations and microorganism and organic matter placements. We found that the CO 2 emissions simulated for the different scenarios could be explained by the distance between microorganisms and organic matter, the diffusion of the substrate and the concentration of the available substrate. For some of the scenarios, we proposed a descriptor of accessibility based on the geodesic distance between microorganisms and organic matter weighted by the amount of organic matter. This microscale descriptor is correlated to the simulated CO 2 flux with a correlation coefficient of 0.69. Highlights Does the microscopic soil organisation explain the macroscopic mineralisation fluxes ? We present a new descriptor based on the geodesic distances between organic matter and microorganisms. We found a correlation between the descriptor of μm‐heterogeneity and the mineralization fluxes. Other scenarios should be carried out under wider environmental μm‐conditions to confirm our results.
    Type of Medium: Online Resource
    ISSN: 1351-0754 , 1365-2389
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 240830-2
    detail.hit.zdb_id: 2020243-X
    detail.hit.zdb_id: 1191614-X
    SSG: 13
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  • 4
    In: Pest Management Science, Wiley, Vol. 67, No. 4 ( 2011-04), p. 397-407
    Abstract: BACKGROUND: Mobility of pesticides in soils is often evaluated and characterised in the surface soil layers rather than at different depths where soil characteristics such as soil organic matter, microbial biomass or clay contents can strongly change pesticide behaviour. The objective of this work was to characterise the reactivity of the herbicide metribuzin in three main soil horizons found in the 0–80 cm profile of an alluvial soil of southern Norway under dynamic transport conditions. RESULTS: A laboratory infiltrometer was used to perform percolation experiments in soil cores sampled in the three horizons Ap, Bw and Bw/C, at a fixed matric potential of − 10 cm, thus preventing pores of equivalent radii higher than 0.015 cm from contributing to water flow. The physical equilibrium transport model correctly described the transport of water tracer (bromide). The distribution coefficient K d values were estimated to be 0.29, 0.17 ± 0.02 and 0.15 ± 0.00 L kg −1 for horizons Ap, Bw and Bw/C respectively, in close agreement with batch sorption data. Degradation was found only for the surface horizon with a short half‐life of about 5 days, in disagreement with longer half‐lives found in batch and field degradation data. CONCLUSION: For all horizons, a kinetic sorption model was needed for better description of metribuzin leaching. Chemical non‐equilibrium was greatest in the Bw horizon and lowest in the Bw/C horizon. Overall, metribuzin exhibited a greater mobility in the deeper horizons. The risk of metribuzin transfer to groundwater in such alluvial soils should therefore be considered. Copyright © 2011 Society of Chemical Industry
    Type of Medium: Online Resource
    ISSN: 1526-498X , 1526-4998
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2011
    detail.hit.zdb_id: 2003455-6
    SSG: 12
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  • 5
    In: European Journal of Soil Science, Wiley, Vol. 73, No. 1 ( 2022-01)
    Abstract: Macroscopic models of soil organic matter (SOM) turnover have faced difficulties in reproducing SOM dynamics or in predicting the spatial distribution of carbon stocks. These models are based on a largely inadequate linear response of soil microorganisms to bulk concentrations of nutrients and it is clear that a new approach to SOM modelling is required. Introducing explicit microbial activity and organic matter (OM) reactivity in macroscopic models represents a challenge because of the fine spatial scales at which the processes occur. To get a better grasp on interactions that take place at the microscale, a new generation of SOM models have been developed at the spatial scale of the soil microenvironments where microorganisms evolve. These models are well adapted to challenge traditional hypotheses about the influence of soil architecture on soil microbial activity. Soil architecture provides the stage for a dynamic spatial accessibility of resources to microbes and the emergence of interactions between the actors in SOM decomposition. In this context, we review microscale models of microbial activity that have been designed for soils and soil analogues. To understand how these models account for spatial accessibility, we look in detail at how soil microenvironments are described in the different approaches and how microbial colonies are spatialized in these microenvironments. We present the advantages and disadvantages of the developed strategies and we discuss their limits. Highlights We review the state of the art in the development of microscale models of soil microbial processes. Microscale models have integrated the tremendous progress in knowledge of OM cycling in soils. We categorize modelling approaches by how they deal with complexity of soil architecture. Modelling benchmarks are required to properly balance complexity and data uncertainty.
    Type of Medium: Online Resource
    ISSN: 1351-0754 , 1365-2389
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 240830-2
    detail.hit.zdb_id: 2020243-X
    detail.hit.zdb_id: 1191614-X
    SSG: 13
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  • 6
    Online Resource
    Online Resource
    Wiley ; 2021
    In:  Global Change Biology Vol. 27, No. 21 ( 2021-11), p. 5405-5406
    In: Global Change Biology, Wiley, Vol. 27, No. 21 ( 2021-11), p. 5405-5406
    Abstract: This article is a Letter to the Editor on: https://onlinelibrary.wiley.com/doi/10.1111/gcb.15365 and add there is a response to this letter at https://onlinelibrary.wiley.com/doi/10.1111/gcb.15850
    Type of Medium: Online Resource
    ISSN: 1354-1013 , 1365-2486
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2020313-5
    SSG: 12
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  • 7
    In: European Journal of Soil Science, Wiley, Vol. 73, No. 3 ( 2022-05)
    Abstract: Over the last decades, a new generation of microscale models has been developed to simulate soil microbial activity. An earlier article (Pot et al., 2021) presented a detailed review of the description of soil architecture and microbial dynamics in these models. In the present article, we summarise the main results obtained by these models according to six model outputs: growth and spatial organisation of microbial colonies, soil hydraulic conductivity, coexistence and trophic interactions of microorganisms, temporal dynamics of the amount of solid and dissolved organic matter in soil and, microbial production of CO 2 . For each of these outputs, we draw particular attention to the respective roles of soil architecture and microbial dynamics, and we report how microscale models allow for disentangling and quantifying them. We finally discuss limitations and future directions of microscale models in combination with the on‐going development of high‐performance imaging tools revealing the spatial heterogeneity of the actors of soil microbial activity. Highlights We review the insights on soil functions derived from microscale models of soil microbial processes. Microscale models disentangle the complex interactions between soil architecture and microbial dynamics. Spatial accessibility of resources to microbes, growth and ecological interactions are key factors in soil functions. Translation of knowledge of interactions at the microscopic scale into larger scales is still in its infancy.
    Type of Medium: Online Resource
    ISSN: 1351-0754 , 1365-2389
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 240830-2
    detail.hit.zdb_id: 2020243-X
    detail.hit.zdb_id: 1191614-X
    SSG: 13
    Library Location Call Number Volume/Issue/Year Availability
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  • 8
    In: Vadose Zone Journal, Wiley, Vol. 15, No. 12 ( 2016-12), p. 1-15
    Abstract: Mobility of Cu and Cd in compost‐amended soil was estimated using HYDRUS‐2D. Cu and Cd mobility was controlled by sorption in the tilled layer. Different sorption estimations were used to model trace metal leaching. EDTA/CaCl 2 extracts ratio gave reliable K d estimates for Cu but not for Cd. Most of the Cu and Cd mass remained in the tilled layer. Two experimental plots amended with a co‐compost of sewage sludge and green wastes (SGW) or with a municipal solid waste compost (MSW) were compared with a control plot without organic amendment (CONT) in terms of trace metals mobility. These plots were equipped with wick lysimeters, time‐domain reflectometry probes and tensiometers for 6 yr (2004–2010). Different soil structures due to tillage and compost incorporation were identified in the tilled layers and reproduced in HYDRUS‐2D for simulating water, Cu, and Cd transport. Two sorption estimation approaches were used, either assuming equilibrium between CaCl 2 and ethylenediaminetetraacetic acid (EDTA) extractable metals ( K d‐1 ) or using equations based on pedotransfer functions assuming nonlinear sorption for Cu ( K f ) and linear sorption for Cd ( K d‐2 ). Lysimeter data on Cu leaching were successfully reproduced with the K d‐1 approach for the SGW and CONT plots (model efficiency coefficient E SGW = 0.97, E CONT = 0.95), while the MSW plot showed better fitting with the K f approach ( E MSW = 0.77), which could be explained by the less stable organic matter of the MSW compost because it takes into account organic matter components (dissolved organic C and soil organic matter). The Cd leaching was reproduced with the K d‐2 approach for the two amended plots ( E SGW = 0.12, E MSW = 0.80), while CONT simulation overestimated leaching. The percentage of measured Cu and Cd leached in reference to input mass was 0.6 and 2.7%, respectively, in the SGW plot compared with 5% for both metals in the MSW plot. Trace metal mobility appeared to be limited in the tilled layer by sorption to organic matter.
    Type of Medium: Online Resource
    ISSN: 1539-1663 , 1539-1663
    Language: English
    Publisher: Wiley
    Publication Date: 2016
    detail.hit.zdb_id: 2088189-7
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