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  • 1
    In: Blood, American Society of Hematology, Vol. 108, No. 11 ( 2006-11-16), p. 3408-3408
    Abstract: While deregulated expression of a D-type cyclin is thought to represent an initiating event in myelomagenesis, the molecular mechanisms of disease progression are not understood. We recently reported that disease progression and high-risk disease are strongly correlated with increased copy number and expression of genes mapping to chromosome 1q. Here we report that elevated expression of CKS1B, a regulatory subunit of the SCF-Skp2 ubiquitin ligase that regulates p27Kip1 protein stability, mapping to an amplicon at 1q21 and over expressed in high-risk myeloma, is required for myeloma cell survival both in vitro and in-vivo. CKS1B expression, absent in plasma cells from healthy individuals and the benign plasma cell dyscrasia monoclonal gammopathy of undetermined significance, is inversely correlated with p27Kip1 protein levels in primary MM. Silencing of CKS1B in MM cell lines JJN3 and OCI-MY5 using shRNAs delivered by constitutive and inducible lentivirus vectors induced stabilization of p27Kip1, cell cycle arrest and apoptosis. Over expression of a non-degradable form of p27Kip1 in JJN3 and OCI-MY5 cells inhibited cell cycle progression, but did not induce apoptosis. We propose that CKS1B may play in important role in myeloma progression through p27Kip1-related and unrelated mechanisms.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2006
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 2
    In: Blood, American Society of Hematology, Vol. 106, No. 11 ( 2005-11-16), p. 1553-1553
    Abstract: Background: High-dose therapy with autologous stem cell transplantation (HDT-ASCT), effecting complete remissions in & gt; 40% with median overall survival exceeding 6 years, has become the standard of care for patients with multiple myeloma (MM). Poor outcome following HDT-ASCT has been linked most strongly to metaphase cytogenetic abnormalities (CA). Tandem duplications and jumping translocations of the chromosome 1q21 region is a recurrent event in advanced MM and 1q21 amplification (amp1q21) and high expression of the CKS1B gene (mapping to 1q21), both signify poor survival in MM treated with HDT-ASCT. Smoldering multiple myeloma (SMM) and monoclonal gammopathy of undetermined significance (MGUS) have many of the genetic hallmarks of overt MM, but especially MGUS rarely proceeds to MM requiring treatment. The aim of this study was determine if amp1q21 relates to disease progression and prognosis. Patients and Methods: 467 untreated patients with MGUS (n = 14), SMM (n = 32) and MM (n = 421) as well as 42 with relapsed MM were examined by means of triple color interphase fluorescence in situ hybridization (TRI-FISH) of the CKS1B locus. Results: The frequency of ampq21 was 0% in 14 patients with MGUS, 43% in 32 with SMM, 43% in 421 with newly diagnosed MM and 78% in 42 with relapsed MM (p & lt;0.001; untreated vs relapsed MM). Among SMM patients, 11 of 14 (78%) with amp1q21 but only 2 of 18 (11%) without amp1q21 progressed to active MM (p & lt;0.001) (median follow-up, 44 mo; range, 0–120 mo). In 421 MM patients treated on Total Therapy 2 (high-dose melphalan-based tandem autotransplants +/− thalidomide), 5-yr overall survival/event-free survival were 75%/61% in without amp1q21 compared to 48%/34% with amp1q21 (both p & lt;0.001). Among 42 relapses, amp1q21 was present in 20/21 occurring on thalidomide vs 13/21 on no thalidomide (p=0.020); the median post-relapse survival in those with amp1q21 was only 11 mo vs 25 mo in patients without amp1q21 (p=0.02). Conclusion: (1) Amp1q21 was absent in MGUS and present in & gt;40% of symptomatic MM and SMM. (2) in SMM, amp1q21 was associated with a higher risk of conversion to MM. (3) In overt MM, amp1q21 conferred inferior event-free and overall survival.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2005
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 3
    In: Blood, American Society of Hematology, Vol. 108, No. 6 ( 2006-09-15), p. 2020-2028
    Abstract: To better define the molecular basis of multiple myeloma (MM), we performed unsupervised hierarchic clustering of mRNA expression profiles in CD138-enriched plasma cells from 414 newly diagnosed patients who went on to receive high-dose therapy and tandem stem cell transplants. Seven disease subtypes were validated that were strongly influenced by known genetic lesions, such as c-MAF– and MAFB-, CCND1- and CCND3-, and MMSET-activating translocations and hyperdiploidy. Indicative of the deregulation of common pathways by gene orthologs, common gene signatures were observed in cases with c-MAF and MAFB activation and CCND1 and CCND3 activation, the latter consisting of 2 subgroups, one characterized by expression of the early B-cell markers CD20 and PAX5. A low incidence of focal bone disease distinguished one and increased expression of proliferation-associated genes of another novel subgroup. Comprising varying fractions of each of the other 6 subgroups, the proliferation subgroup dominated at relapse, suggesting that this signature is linked to disease progression. Proliferation and MMSET-spike groups were characterized by significant overexpression of genes mapping to chromosome 1q, and both exhibited a poor prognosis relative to the other groups. A subset of cases with a predominating myeloid gene expression signature, excluded from the profiling analyses, had more favorable baseline characteristics and superior prognosis to those lacking this signature.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2006
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 4
    In: Blood, American Society of Hematology, Vol. 109, No. 6 ( 2007-03-15), p. 2276-2284
    Abstract: To molecularly define high-risk disease, we performed microarray analysis on tumor cells from 532 newly diagnosed patients with multiple myeloma (MM) treated on 2 separate protocols. Using log-rank tests of expression quartiles, 70 genes, 30% mapping to chromosome 1 (P 〈 .001), were linked to early disease-related death. Importantly, most up-regulated genes mapped to chromosome 1q, and down-regulated genes mapped to chromosome 1p. The ratio of mean expression levels of up-regulated to down-regulated genes defined a high-risk score present in 13% of patients with shorter durations of complete remission, event-free survival, and overall survival (training set: hazard ratio [HR], 5.16; P 〈 .001; test cohort: HR, 4.75; P 〈 .001). The high-risk score also was an independent predictor of outcome endpoints in multivariate analysis (P 〈 .001) that included the International Staging System and high-risk translocations. In a comparison of paired baseline and relapse samples, the high-risk score frequency rose to 76% at relapse and predicted short postrelapse survival (P 〈 .05). Multivariate discriminant analysis revealed that a 17-gene subset could predict outcome as well as the 70-gene model. Our data suggest that altered transcriptional regulation of genes mapping to chromosome 1 may contribute to disease progression, and that expression profiling can be used to identify high-risk disease and guide therapeutic interventions.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2007
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 5
  • 6
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2008
    In:  Clinical Cancer Research Vol. 14, No. 15 ( 2008-08-01), p. 4821-4829
    In: Clinical Cancer Research, American Association for Cancer Research (AACR), Vol. 14, No. 15 ( 2008-08-01), p. 4821-4829
    Abstract: Changes in global gene expression patterns in tumor cells following in vivo therapy may vary by treatment and provide added or synergistic prognostic power over pretherapy gene expression profiles (GEP). This molecular readout of drug-cell interaction may also point to mechanisms of action/resistance. In newly diagnosed patients with multiple myeloma (MM), microarray data were obtained on tumor cells prior to and 48 hours after in vivo treatment using dexamethasone (n = 45) or thalidomide (n = 42); in the case of relapsed MM, microarray data were obtained prior to (n = 36) and after (n = 19) lenalidomide administration. Dexamethasone and thalidomide induced both common and unique GEP changes in tumor cells. Combined baseline and 48-hour changes in GEP in a subset of genes, many related to oxidative stress and cytoskeletal dynamics, were predictive of outcome in newly diagnosed MM patients receiving tandem transplants. Thalidomide-altered genes also changed following lenalidomide exposure and predicted event-free and overall survival in relapsed patients receiving lenalidomide as a single agent. Combined with baseline molecular features, changes in GEP following short-term single-agent exposure may help guide treatment decisions for patients with MM. Genes whose drug-altered expression were found to be related to survival may point to molecular switches related to response and/or resistance to different classes of drugs.
    Type of Medium: Online Resource
    ISSN: 1078-0432 , 1557-3265
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2008
    detail.hit.zdb_id: 1225457-5
    detail.hit.zdb_id: 2036787-9
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  • 7
    In: Blood, American Society of Hematology, Vol. 106, No. 11 ( 2005-11-16), p. 1155-1155
    Abstract: Background: T2 randomized 668 patients up-front to +/− T as part of an intensive combination chemotherapy program prior to and after melphalan-based tandem autotransplants (Barlogie, ASCO 2005). Patients randomized to T had superior 2-yr CR (52% vs 43%, p & lt;0.001) and 5-yr EFS (56% vs 45%; p=0.02). The similar 5-yr OS (67% on T vs 63% without T) was due to the shorter PRS of patients on the T arm. Given our recent reports of an adverse impact in TT2 of amp1q21 at diagnosis, we examined whether there were differences in amp1q21 between the 2 study arms at baseline and relapse. Patients and Methods: All standard pre-treatment laboratory features including the frequency of cytogenetic abnormalities (CA) were similar in the 2 study arms. FISH data to assess amp1q21 were available for 475 patients at baseline and at relapse in 46 patients, of whom 30 also had baseline data. The amp1q21 index is a weighted average of the proportions of cells with 3 and & gt;3 gene copies, ranging from 0 through 100. The post-relapse therapies were similar among the 2 arms and included T in all patients previously not on T and for most previously on T, often together with bortezomib + DEX (VTD regimen; Barlogie, Blood, 2004); DT-PACE and 3rd autotransplants as well as mini-allotransplants were also applied either as first or subsequent salvage maneuver - with similar frequencies among the 2 study arms. Results: The median PRS was 2.7 years among 95 patients (28%) in the no T group compared to 1.1 years for 67 patients (21%) on T (p=0.002). The amp1q21 index was similar in the 2 arms considering all 475 patients with FISH data available at diagnosis (p=0.28); this also applied for baseline levels among those who have relapsed (p=0.22). However, FISH analysis applied to 23 relapse samples from each arm showed that the 1q21 amp index was significantly higher in those on T than not on T (median, 69 vs 22; p & lt;0.001). When restricted to the 30 paired baseline/relapse samples, the amp1q21 index increased at relapse in both study arms (p=0.0015), and more markedly in some on no T with very low levels at baseline. Among all 46 patients with relapse samples, randomization to T loses significance as a predictor of PRS after adjustment for amp1q21 (p=0.5), whereas amp1q21 remains a strong predictor (p=0.003, HR: 1.15 for an index difference of 10). Conclusion: Similar OS in the 2 study arms of TT2, despite higher CR rate and superior EFS on T, reflects the shorter PRS of T-randomized patients, which could be traced to differences in tumor genetics between the 2 arms: amp1q21 indices were similar at baseline but higher at relapse for patients on T; those not on T relapsed earlier; (3) among baseline and relapse variables examined, PRS was most strongly affected by amp1q21 index at relapse, neutralizing the notion of a potentially detrimental effect of initial treatment with T on subsequent salvage therapies.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2005
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 8
    In: Blood, American Society of Hematology, Vol. 106, No. 11 ( 2005-11-16), p. 1218-1218
    Abstract: Gene expression profiling of plasma cells (GEP-PC) has provided major insights into myeloma pathobiology. However the data about GEP-PC in preneoplastic gammopathy (MGUS) or asymptomatic myeloma (AM) are limited, and gene expression patterns that might predict outcome in these patients have not been defined. We analyzed GEP (using U133Plus Affymetrix microarrays), of plasma cells isolated by immuno-magnetic bead selection with CD138 microbeads, from the bone marrow of patients with MGUS (n=16) and asymptomatic myeloma (AM; n=18) enrolled in a prospective South West Oncology Group (SWOG) observational study. Data from normal plasma cells (PCs) and from 105 myeloma PCs were included as controls. Myeloma PCs were randomly selected to include at least 15 patients from each of the 7 subgroups previously identified based on GEP of myeloma tumor cells (Zhan and Shaughnessy, ASH 2004). After the suppression of immunoglobulin (Ig) genes, there were 1297 genes that significantly differed in expression between MGUS-PCs and MM-PCs, and 1099 genes that differed between MGUS-PCs and normal PCs with a 1% false discovery rate. Hierarchical cluster analysis of all samples was performed using 1000 plasma cell signature genes that were most differentially expressed between normal and myeloma PCs. These data demonstrated that both MGUS and AM samples were distributed between normal and MM samples. A prediction analysis of microarrays (PAM) model (PNAS99:6567, 2002) utilizing 134 genes was then developed to determine if the signature from these genes in MGUS/AM was more similar to normal or to myeloma plasma cells. In this analysis, 11/16 (69%) of the MGUS samples were more similar to normal PC, compared to 6/18 (33%) of the AM samples (p=0.04). At present, there are no reliable phenotypic markers to distinguish between normal and malignant PCs within the bulk CD138+ population. Gene expression spikes for cyclin D1 and MAF/MAF-B were seen in both MGUS and AM cohorts, including in some patients with normal PC signature. These data provide the largest comparison to date, of GEP of PCs in preneoplastic versus malignant gammopathies and suggest that GEP may be a useful tool to prospectively identify subsets of patients within the MGUS/AM population with dominant normal PC or MM PC signatures, and potentially differing prognosis. Further analysis of differentially expressed genes between MGUS/MM PCs identified in this dataset may allow insights into the genomic changes in tumor cells underlying the malignant progression of myeloma.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2005
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 9
    In: Blood, American Society of Hematology, Vol. 106, No. 11 ( 2005-11-16), p. 502-502
    Abstract: The prognosis of patients with MM varies widely. High risk is best captured by cellular and molecular genetic features. Objective: to determine whether predictive power of baseline GEP and metaphase cytogenetic abnormalities (CA) could be improved by availability of GEP data obtained 48hr after single agent D or T, pre-therapy. A total of 668 patients were enrolled on TT2, 323 randomized to T and 345 without T (ASCO 05). When randomized to T/no T, Baseline and 48 hr GEP samples were obtained from 32/41 receiving a test dose of T/D vs 10/14 receiving full VAD+T/VAD regimen. A total of 97 baseline/early treatment GEP pairs were analyzed. Combined baseline expression and 48hr expression changes of 151 genes predicted EFS at a false discovery rate (FDR) of 10%. The table compares baseline EFS high-risk dysregulation to the direction of 48 hour changes, confering improved EFS. Decreases over 48 hours are associated with improved EFS in 74 of 78 genes (upregulated expression confers poor survival at baseline). In the remaining 4, perturbation in the direction of an additional increase may be a marker of early response. With EFS-associated genes, we trained 15 EFS prediction models using baseline expression and 15 prediction models using the change in expression between baseline and 48 hours. Training sets were random splits of 97 patients and baseline and change models separately predicted an EFS risk index in the remaining validation patients (standardized to a variance of 1). Risk indices were compared to an indicator of cytogenetic abnormalities (CA) among validation patients using multivariate proportional hazards analyses. The table shows median hazard ratios and p-values for competing predictors in 15 validation sets. Without cytogenetics, combined GEP baseline and change indices were significant predictors in all 15 validation sets (median combined P-value of 0.002). The table shows median performing GEP model of 15 in a multivariate analysis including cytogenetics for all 97 patients. 48 hour changes in gene expression in newly diagnosed myeloma patients can significantly predict EFS in validated prediction models, alone and in combination with baseline GEP. After adjustment for baseline and 48-hour GEP change indices, metaphase cytogenetics is no longer a significant predictor in independent patient samples. Baseline EFS risk and 48 hour changes associated with good outcome in 151 EFS-associated genes. Improved EFS Decrease (HR & gt;=1 Increase (HR & lt;1) Baseline High Risk Downregulated (HR & lt;1) 6 67 Upregulated (HR & gt;+ 1) 74 4 Median Hazard Ratios and P-values for Multivariate Models in 15 Validation Sets HR P # of p-values below .05 (of 15) GEP baseline Risk 2.1 0.037 10 EP 48 hr change risk 1.9 0.052 7 CA 1.6 0.310 0 Median validation set overall P-value 0.0003 Median GEP EFS baseline/48 hour EFS prediction model n=97 HR P GEP baseline Risk 2.0 0.004 GEP 48 hr change risk 2.6 0.001 CA 1.4 0.330
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2005
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 10
    In: Blood, American Society of Hematology, Vol. 106, No. 11 ( 2005-11-16), p. 623-623
    Abstract: Background: The presence of CA (esp. hypodiploidy and del13) defines a “malignant” myeloma entity with a very poor prognosis. Gene expression profiling (GEP) studies in 351 patients receiving Total Therapy 2 (TT2) identified overexpression of CKS1B mapping to 1q21 as an adverse feature for EFS and OS (Shaughnessy et al., ASH 2004). The aim of this study was to determine whether more readily applicable FISH detection of amp1q21, available in 476 patients, had independent and potentially equally important prognostic implications as CA and GEP-based CKS1B expression levels. Patients and Methods: The details of the development of the amp1q21 index are contained in (Shaughnessy et al, submitted, Nature Medicine). The amp1q21 index is a weighted average of the proportions of cells with 3 and & gt;3 copies of the CKS1B gene, ranging from 0 through 100. The risk of event and death increases as the amp1q21 index increases; for simplicity in reporting this relationship, patients tumor cells exhibited diploid, triploid, and & gt; triploid using cut points selected to maximize the overall difference in OS between these three groups. Results: Of 668 patients enrolled in TT2, 476 had FISH data, with no amp1q21 in 58%, trisomy in 31% and & gt; trisomy in 11%. With median follow-up 3 years, 187 had an event and 131 died. Median EFS was 63 mo with an estimated 59% OS at 72 mo. Three-year estimates of EFS and OS progressively decreased with 1q21 amplification level: from 80%/89% with no amp1q21 to 48%/69% with trisomy to 43%/54% with at & gt; trisomy (p & lt;0.001/p & lt;0.001). On multivariate analysis that included standard prognostic factors, ISS stage and CA, trisomy and & gt; trisomy of 1q21 retained independent adverse implications for both EFS (HR 2.08, p & lt;0.001) and OS (HR 2.15; p & lt;0.001). In the no CA group of 327 patients, 3-yr EFS/OS progressively declined from 82%/92% in the 213 patients with no amp1q21 to 63%/79% in 87 with trisomy, to 40%/58% in 27 with & gt; trisomyy (p & lt;0.001/p & lt;0.001). Among the 144 patients (31%) with CA, 3-yr EFS/OS were 72%/77% among 61 with no amplification and similar at 33%/51% in the remaining 83 with & gt;= trisomy (p & lt;0.001/p=0.003). Using an 18 month landmark analysis, CR significantly improved subsequent 3-yr EFS/OS among the 130 with amp1q21 (at least trisomy) from 42%/51% to 65%/76% (p=0.01/p & lt;0.001) - similar to those without amp1q21 (in whom CR was not yet important). Conclusion: A gene dose-dependent adverse effect on both EFS and OS was observed for amp1q21. The 2/3 of patients without CA (and historically exhibiting much better prognosis than those with CA) could be separated into 3 distinct subgroups based on level of amp1q21. Conversely, among patients with CA, absence of amp1q21 implied EFS and OS levels similar to those without CA but with trisomy. Finally, CR was critical to overcoming the negative consequences of amp1q21. Collectively, our data strongly support the routine application of FISH for amp1q21 analysis in clinical trials of MM.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2005
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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