KOBV Portal

Hits per page

hits 1 - 10 | 175 hits

Sorting

Online Resource

WHEY POWDER AS A CARRIER IN SPRAY DRYING OF SUMAC CONCENTRATE : WHEY POWDER AS A CARRIER OF SUMAC

BAYRAM, ÖZGÜR ARSLAN ; BAYRAM, MUSTAFA ; TEKİN, ALI RIZA

Wiley ; 2008

In: Journal of Food Process Engineering Vol. 31, No. 1 ( 2008-01-15), p. 105-119

add to watchlist on the watchlist

Details

In: Journal of Food Process Engineering, Wiley, Vol. 31, No. 1 ( 2008-01-15), p. 105-119

Type of Medium: Online Resource

ISSN: 0145-8876

URL: Article

DOI: 10.1111/j.1745-4530.2007.00168.x

Language: English

Publisher: Wiley

Publication Date: 2008

detail.hit.zdb_id: 2175259-X

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

Online Resource

MybA, a new player driving survival of the conidium of the human pathogen Aspergillus fumigatus

Sarikaya Bayram, Özlem ; Latgé, Jean Paul ; Bayram, Özgür

Springer Science and Business Media LLC ; 2018

In: Current Genetics Vol. 64, No. 1 ( 2018-2), p. 141-146

add to watchlist on the watchlist

Details

In: Current Genetics, Springer Science and Business Media LLC, Vol. 64, No. 1 ( 2018-2), p. 141-146

Type of Medium: Online Resource

ISSN: 0172-8083 , 1432-0983

URL: Article

DOI: 10.1007/s00294-017-0740-5

RVK:

WA 15000

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2018

detail.hit.zdb_id: 1458984-9

SSG: 12

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

Online Resource

The use of immunoaffinity purification approaches coupled with LC-MS/MS offers a powerful strategy to identify protein complexes in filamentous fungi

Jones, Gary ; Usher, Jane ; Bauer, Ingo ; [et al.]

Portland Press Ltd. ; 2023

In: Essays in Biochemistry Vol. 67, No. 5 ( 2023-09-13), p. 877-892

add to watchlist on the watchlist

Details

In: Essays in Biochemistry, Portland Press Ltd., Vol. 67, No. 5 ( 2023-09-13), p. 877-892

Abstract: Fungi are a diverse group of organisms that can be both beneficial and harmful to mankind. They have advantages such as producing food processing enzymes and antibiotics, but they can also be pathogens and produce mycotoxins that contaminate food. Over the past two decades, there have been significant advancements in methods for studying fungal molecular biology. These advancements have led to important discoveries in fungal development, physiology, pathogenicity, biotechnology, and natural product research. Protein complexes and protein–protein interactions (PPIs) play crucial roles in fungal biology. Various methods, including yeast two-hybrid (Y2H) and bimolecular fluorescence complementation (BiFC), are used to investigate PPIs. However, affinity-based PPI methods like co-immunoprecipitation (Co-IP) are highly preferred because they represent the natural conditions of PPIs. In recent years, the integration of liquid chromatography coupled with mass spectrometry (LC-MS/MS) has been used to analyse Co-IPs, leading to the discovery of important protein complexes in filamentous fungi. In this review, we discuss the tandem affinity purification (TAP) method and single affinity purification methods such as GFP, HA, FLAG, and MYC tag purifications. These techniques are used to identify PPIs and protein complexes in filamentous fungi. Additionally, we compare the efficiency, time requirements, and material usage of Sepharose™ and magnetic-based purification systems. Overall, the advancements in fungal molecular biology techniques have provided valuable insights into the complex interactions and functions of proteins in fungi. The methods discussed in this review offer powerful tools for studying fungal biology and will contribute to further discoveries in this field.

Type of Medium: Online Resource

ISSN: 0071-1365 , 1744-1358

URL: Article

DOI: 10.1042/EBC20220253

RVK:

WD 1002

RVK:

WD 4010

RVK:

WD 4000

Language: English

Publisher: Portland Press Ltd.

Publication Date: 2023

SSG: 12

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

Online Resource

An Anatomy of Fungal Eye: Fungal Photoreceptors and Signalling Mechanisms

Bayram, Özlem Sarikaya ; Bayram, Özgür

MDPI AG ; 2023

In: Journal of Fungi Vol. 9, No. 5 ( 2023-05-19), p. 591-

add to watchlist on the watchlist

Details

In: Journal of Fungi, MDPI AG, Vol. 9, No. 5 ( 2023-05-19), p. 591-

Abstract: Organisms have developed different features to capture or sense sunlight. Vertebrates have evolved specialized organs (eyes) which contain a variety of photosensor cells that help them to see the light to aid orientation. Opsins are major photoreceptors found in the vertebrate eye. Fungi, with more than five million estimated members, represent an important clade of living organisms which have important functions for the sustainability of life on our planet. Light signalling regulates a range of developmental and metabolic processes including asexual sporulation, sexual fruit body formation, pigment and carotenoid production and even production of secondary metabolites. Fungi have adopted three groups of photoreceptors: (I) blue light receptors, White Collars, vivid, cryptochromes, blue F proteins and DNA photolyases, (II) red light sensors, phytochromes and (III) green light sensors and microbial rhodopsins. Most mechanistic data were elucidated on the roles of the White Collar Complex (WCC) and the phytochromes in the fungal kingdom. The WCC acts as both photoreceptor and transcription factor by binding to target genes, whereas the phytochrome initiates a cascade of signalling by using mitogen-activated protein kinases to elicit its cellular responses. Although the mechanism of photoreception has been studied in great detail, fungal photoreception has not been compared with vertebrate vision. Therefore, this review will mainly focus on mechanistic findings derived from two model organisms, namely Aspergillus nidulans and Neurospora crassa and comparison of some mechanisms with vertebrate vision. Our focus will be on the way light signalling is translated into changes in gene expression, which influences morphogenesis and metabolism in fungi.

Type of Medium: Online Resource

ISSN: 2309-608X

URL: Article

DOI: 10.3390/jof9050591

Language: English

Publisher: MDPI AG

Publication Date: 2023

detail.hit.zdb_id: 2784229-0

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

Online Resource

Poster Presentations

Önder, Arif ; Adanır, Aslı Sürer ; Bilaç, Öznur ; [et al.]

AVES YAYINCILIK A.Ş. ; 2018

In: Psychiatry and Clinical Psychopharmacology Vol. 28, No. sup1 ( 2018-04-30), p. 74-113

add to watchlist on the watchlist

Details

In: Psychiatry and Clinical Psychopharmacology, AVES YAYINCILIK A.Ş., Vol. 28, No. sup1 ( 2018-04-30), p. 74-113

Type of Medium: Online Resource

ISSN: 2475-0573 , 2475-0581

URL: Article

DOI: 10.1080/24750573.2018.1465020

Language: English

Publisher: AVES YAYINCILIK A.Ş.

Publication Date: 2018

detail.hit.zdb_id: 2964147-0

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

Online Resource

The KdmB-EcoA-RpdA-SntB chromatin complex binds regulatory genes and coordinates fungal development with mycotoxin synthesis

Karahoda, Betim ; Pardeshi, Lakhansing ; Ulas, Mevlut ; [et al.]

Oxford University Press (OUP) ; 2022

In: Nucleic Acids Research Vol. 50, No. 17 ( 2022-09-23), p. 9797-9813

add to watchlist on the watchlist

Details

In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 50, No. 17 ( 2022-09-23), p. 9797-9813

Abstract: Chromatin complexes control a vast number of epigenetic developmental processes. Filamentous fungi present an important clade of microbes with poor understanding of underlying epigenetic mechanisms. Here, we describe a chromatin binding complex in the fungus Aspergillus nidulans composing of a H3K4 histone demethylase KdmB, a cohesin acetyltransferase (EcoA), a histone deacetylase (RpdA) and a histone reader/E3 ligase protein (SntB). In vitro and in vivo evidence demonstrate that this KERS complex is assembled from the EcoA-KdmB and SntB-RpdA heterodimers. KdmB and SntB play opposing roles in regulating the cellular levels and stability of EcoA, as KdmB prevents SntB-mediated degradation of EcoA. The KERS complex is recruited to transcription initiation start sites at active core promoters exerting promoter-specific transcriptional effects. Interestingly, deletion of any one of the KERS subunits results in a common negative effect on morphogenesis and production of secondary metabolites, molecules important for niche securement in filamentous fungi. Consequently, the entire mycotoxin sterigmatocystin gene cluster is downregulated and asexual development is reduced in the four KERS mutants. The elucidation of the recruitment of epigenetic regulators to chromatin via the KERS complex provides the first mechanistic, chromatin-based understanding of how development is connected with small molecule synthesis in fungi.

Type of Medium: Online Resource

ISSN: 0305-1048 , 1362-4962

URL: Article

DOI: 10.1093/nar/gkac744

RVK:

WA 15000

Language: English

Publisher: Oxford University Press (OUP)

Publication Date: 2022

detail.hit.zdb_id: 1472175-2

SSG: 12

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

Online Resource

Interview: The New Silk Road—Health as Soft Power

Kickbusch, Ilona ; Bayram, Mustafa ; Bayram, Özgür ; [et al.]

Mary Ann Liebert Inc ; 2018

In: OMICS: A Journal of Integrative Biology Vol. 22, No. 6 ( 2018-06), p. 449-453

add to watchlist on the watchlist

Details

In: OMICS: A Journal of Integrative Biology, Mary Ann Liebert Inc, Vol. 22, No. 6 ( 2018-06), p. 449-453

Type of Medium: Online Resource

ISSN: 1557-8100

URL: Article

DOI: 10.1089/omi.2018.0085

Language: English

Publisher: Mary Ann Liebert Inc

Publication Date: 2018

detail.hit.zdb_id: 2030312-9

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

Online Resource

Assembly of a heptameric STRIPAK complex is required for coordination of light-dependent multicellular fungal development with secondary metabolism in Aspergillus nidulans

Elramli, Nadia ; Karahoda, Betim ; Sarikaya-Bayram, Özlem ; [et al.]

Public Library of Science (PLoS) ; 2019

In: PLOS Genetics Vol. 15, No. 3 ( 2019-3-18), p. e1008053-

add to watchlist on the watchlist

Details

In: PLOS Genetics, Public Library of Science (PLoS), Vol. 15, No. 3 ( 2019-3-18), p. e1008053-

Type of Medium: Online Resource

ISSN: 1553-7404

URL: Article

DOI: 10.1371/journal.pgen.1008053

DOI: 10.1371/journal.pgen.1008053.g001

DOI: 10.1371/journal.pgen.1008053.g002

DOI: 10.1371/journal.pgen.1008053.g003

DOI: 10.1371/journal.pgen.1008053.g004

DOI: 10.1371/journal.pgen.1008053.g005

DOI: 10.1371/journal.pgen.1008053.g006

DOI: 10.1371/journal.pgen.1008053.g007

DOI: 10.1371/journal.pgen.1008053.s001

DOI: 10.1371/journal.pgen.1008053.s002

DOI: 10.1371/journal.pgen.1008053.s003

DOI: 10.1371/journal.pgen.1008053.s004

DOI: 10.1371/journal.pgen.1008053.s005

DOI: 10.1371/journal.pgen.1008053.s006

DOI: 10.1371/journal.pgen.1008053.s007

DOI: 10.1371/journal.pgen.1008053.s008

DOI: 10.1371/journal.pgen.1008053.s009

DOI: 10.1371/journal.pgen.1008053.s010

DOI: 10.1371/journal.pgen.1008053.s011

DOI: 10.1371/journal.pgen.1008053.s012

DOI: 10.1371/journal.pgen.1008053.s013

DOI: 10.1371/journal.pgen.1008053.s014

DOI: 10.1371/journal.pgen.1008053.s015

DOI: 10.1371/journal.pgen.1008053.s016

DOI: 10.1371/journal.pgen.1008053.s017

DOI: 10.1371/journal.pgen.1008053.s018

DOI: 10.1371/journal.pgen.1008053.s019

DOI: 10.1371/journal.pgen.1008053.s020

DOI: 10.1371/journal.pgen.1008053.s021

DOI: 10.1371/journal.pgen.1008053.s022

DOI: 10.1371/journal.pgen.1008053.s023

DOI: 10.1371/journal.pgen.1008053.s024

DOI: 10.1371/journal.pgen.1008053.s025

DOI: 10.1371/journal.pgen.1008053.s026

DOI: 10.1371/journal.pgen.1008053.s027

DOI: 10.1371/journal.pgen.1008053.s028

DOI: 10.1371/journal.pgen.1008053.s029

DOI: 10.1371/journal.pgen.1008053.s030

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2019

detail.hit.zdb_id: 2186725-2

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

Online Resource

Cotton flow

Kişisel, Ali Ulaş Özgür ; Sarıoğlu, Özgür ; Tekin, Bayram

IOP Publishing ; 2008

In: Classical and Quantum Gravity Vol. 25, No. 16 ( 2008-08-21), p. 165019-

add to watchlist on the watchlist

Details

In: Classical and Quantum Gravity, IOP Publishing, Vol. 25, No. 16 ( 2008-08-21), p. 165019-

Type of Medium: Online Resource

ISSN: 0264-9381 , 1361-6382

URL: Article

DOI: 10.1088/0264-9381/25/16/165019

Language: Unknown

Publisher: IOP Publishing

Publication Date: 2008

detail.hit.zdb_id: 1473117-4

SSG: 16,12

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

Online Resource

The HamE scaffold positively regulates MpkB phosphorylation to promote development and secondary metabolism in Aspergillus nidulans

Frawley, Dean ; Karahoda, Betim ; Sarikaya Bayram, Özlem ; [et al.]

Springer Science and Business Media LLC ; 2018

In: Scientific Reports Vol. 8, No. 1 ( 2018-11-08)

add to watchlist on the watchlist

Details

In: Scientific Reports, Springer Science and Business Media LLC, Vol. 8, No. 1 ( 2018-11-08)

Abstract: Mitogen-activated protein kinase (MAPK) pathways are conserved signalling cascades in eukaryotes which regulate a myriad of processes in fungi from sexual reproduction to stress responses. These pathways rely on recruitment of three kinases on a scaffold protein to facilitate efficient kinase phosphorylation and subsequent downstream signalling to the nucleus. The model filamentous fungus Aspergillus nidulans utilises a MAPK pathway termed the pheromone module to regulate both development and secondary metabolism. This complex consists of the MAP3K (SteC), MAP2K (MkkB), MAPK (MpkB) and adaptor protein SteD. To date, there has been no scaffold protein identified for this MAPK pathway. In this study, we characterised a protein termed HamE, which we propose as a scaffold that regulates kinase phosphorylation and signalling in the pheromone module. Mass spectrometry analysis and BIFC experiments revealed that HamE physically interacts with both MkkB and MpkB and transiently interacts with SteC. Deletion of hamE or any of the pheromone module kinases results in reduced sporulation and complete abolishment of cleistothecia production. Mutants also exhibited reductions in expression of secondary metabolite gene clusters, including the velvet complex and sterigmatocystin genes. HamE acts as a positive regulator of MpkB phosphorylation, allowing for HamE to subsequently regulate development and secondary metabolism.

Type of Medium: Online Resource

ISSN: 2045-2322

URL: Article

DOI: 10.1038/s41598-018-34895-6

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2018

detail.hit.zdb_id: 2615211-3

Bookmarklink

Library	Location	Call Number	Volume/Issue/Year	Availability

Others were also interested in ...

Online Resource

Open Access Request

Availability (electronic / print)

Link to publisher

hits 1 - 10 | 175 hits

Nothing or not found what you are looking for? Please check your search query or use the Interlibrary Loan Search.

Kooperativer Bibliotheksverbund

Berlin Brandenburg