In:
PLOS ONE, Public Library of Science (PLoS), Vol. 18, No. 2 ( 2023-2-24), p. e0279597-
Abstract:
Developments in sequencing technologies and the sequencing of an ever-increasing number of genomes have revolutionised studies of biodiversity and organismal evolution. This accumulation of data has been paralleled by the creation of numerous public biological databases through which the scientific community can mine the sequences and annotations of genomes, transcriptomes, and proteomes of multiple species. However, to find the appropriate databases and bioinformatic tools for respective inquiries and aims can be challenging. Here, we present a compilation of DNA and protein databases, as well as bioinformatic tools for phylogenetic reconstruction and a wide range of studies on molecular evolution. We provide a protocol for information extraction from biological databases and simple phylogenetic reconstruction using probabilistic and distance methods, facilitating the study of biodiversity and evolution at the molecular level for the broad scientific community.
Type of Medium:
Online Resource
ISSN:
1932-6203
DOI:
10.1371/journal.pone.0279597
DOI:
10.1371/journal.pone.0279597.g001
DOI:
10.1371/journal.pone.0279597.g002
DOI:
10.1371/journal.pone.0279597.g003
DOI:
10.1371/journal.pone.0279597.g004
DOI:
10.1371/journal.pone.0279597.g005
DOI:
10.1371/journal.pone.0279597.g006
DOI:
10.1371/journal.pone.0279597.t001
DOI:
10.1371/journal.pone.0279597.t002
DOI:
10.1371/journal.pone.0279597.t003
DOI:
10.1371/journal.pone.0279597.t004
DOI:
10.1371/journal.pone.0279597.t005
DOI:
10.1371/journal.pone.0279597.t006
DOI:
10.1371/journal.pone.0279597.t007
DOI:
10.1371/journal.pone.0279597.t008
DOI:
10.1371/journal.pone.0279597.t009
DOI:
10.1371/journal.pone.0279597.t010
DOI:
10.1371/journal.pone.0279597.t011
DOI:
10.1371/journal.pone.0279597.s001
DOI:
10.1371/journal.pone.0279597.s002
DOI:
10.1371/journal.pone.0279597.s003
DOI:
10.1371/journal.pone.0279597.s004
DOI:
10.1371/journal.pone.0279597.s005
DOI:
10.1371/journal.pone.0279597.s006
DOI:
10.1371/journal.pone.0279597.s007
DOI:
10.1371/journal.pone.0279597.r001
DOI:
10.1371/journal.pone.0279597.r002
DOI:
10.1371/journal.pone.0279597.r003
DOI:
10.1371/journal.pone.0279597.r004
DOI:
10.1371/journal.pone.0279597.r005
DOI:
10.1371/journal.pone.0279597.r006
Language:
English
Publisher:
Public Library of Science (PLoS)
Publication Date:
2023
detail.hit.zdb_id:
2267670-3
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