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  • 1
    Online Resource
    Online Resource
    Elsevier BV ; 2022
    In:  World Neurosurgery Vol. 160 ( 2022-04), p. e520-e528
    In: World Neurosurgery, Elsevier BV, Vol. 160 ( 2022-04), p. e520-e528
    Type of Medium: Online Resource
    ISSN: 1878-8750
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2022
    detail.hit.zdb_id: 2530041-6
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  • 2
    In: Digestion, S. Karger AG, Vol. 67, No. 1-2 ( 2003), p. 25-31
    Abstract: 〈 i 〉 Background: 〈 /i 〉 Although 〈 i 〉 Helicobacter pylori 〈 /i 〉 is a significant etiologic factor of peptic ulcer disease, it remains unknown why ulcers develop only in the minority of infected individuals. 〈 i 〉 Aim: 〈 /i 〉 The aim of this cross-sectional study was to evaluate the association between the presence of duodenal ulcer in 〈 i 〉 H. pylori- 〈 /i 〉 infected patients and different risk factors. 〈 i 〉 Methods: 〈 /i 〉 A total of 122 〈 i 〉 H. pylori- 〈 /i 〉 infected patients were enrolled; 79 had duodenal ulcer and 43 gastritis. Univariate analysis was conducted using either Fisher’s exact test or exact Cochrane-Armitage trend test. In multivariate analysis the logistic model was used. 〈 i 〉 Results: 〈 /i 〉 Univariate analysis indicated six factors (male sex, smoking, antral 〈 i 〉 H. pylori 〈 /i 〉 density, 〈 i 〉 cagA 〈 /i 〉 presence in antrum, and 〈 i 〉 vacA 〈 /i 〉 s1a presence in antrum and corpus). Four factors (sex, smoking-alcohol index, 〈 i 〉 H. pylori 〈 /i 〉 density index, and 〈 i 〉 cagA 〈 /i 〉 index) were found to be significant in multivariate analysis. The best model predicting duodenal ulcer included male sex, smoking, presence of 〈 i 〉 H. pylori 〈 /i 〉 on histopathology in antrum and 〈 i 〉 cagA 〈 /i 〉 presence in corpus. 〈 i 〉 Conclusion: 〈 /i 〉 Although several risk factors were significantly associated with duodenal ulcer, we failed in the identification of either a single risk factor or a set of factors that can unequivocally differentiate patients with ulcer from those with gastritis.
    Type of Medium: Online Resource
    ISSN: 0012-2823 , 1421-9867
    RVK:
    RVK:
    Language: English
    Publisher: S. Karger AG
    Publication Date: 2003
    detail.hit.zdb_id: 1482218-0
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  • 3
    Online Resource
    Online Resource
    SAGE Publications ; 2008
    In:  Statistical Methods in Medical Research Vol. 17, No. 5 ( 2008-10), p. 463-466
    In: Statistical Methods in Medical Research, SAGE Publications, Vol. 17, No. 5 ( 2008-10), p. 463-466
    Type of Medium: Online Resource
    ISSN: 0962-2802 , 1477-0334
    Language: English
    Publisher: SAGE Publications
    Publication Date: 2008
    detail.hit.zdb_id: 2001539-2
    detail.hit.zdb_id: 1136948-6
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  • 4
    In: Blood, American Society of Hematology, Vol. 126, No. 23 ( 2015-12-03), p. 3744-3744
    Abstract: Purpose: We evaluated whether event-free survival (EFS) can be used as a surrogate for overall survival (OS) in patients treated for acute myeloid leukemia. Material: We carried out a meta-analysis of individual patient data from four randomized clinical trials carried out under the auspices of the German-Austrian Acute Myeloid Leukemia Study Group (AMLSG): AMLHD 98B (Schlenk et al. Leukemia 2004 18:1798-803; n=254), AMLSG 06-04 (NCT00151255, n=189), AMLSG 07-04 (NCT00151242, n=1,100) and AMLSG 12-09 (NCT01180322, n=268). Some of these trials addressed multiple therapeutic questions, which resulted in a total of 7 independent treatment comparisons. Methods: A two-level modelling approach was used to estimate the association between EFS and OS, and between the treatment effects on EFS and on OS. At the individual level, a copula was fitted to model the joint distribution of EFS and OS, and Spearman's rank correlation coefficient (rho) was used to quantify the association between the endpoints. At the trial-level, a linear regression was fitted through the estimated treatment effects (Weibull-model-based log hazard ratios) on EFS and OS, taking into account the estimation error. The coefficient of determination (R²) was used to quantify the association between the treatment effects. The surrogate threshold effect (STE) was estimated as the treatment effect on EFS that would predict a significant treatment effect on OS. Results: A total of n=1,811 patients were included in the analysis. Spearman's correlation coefficient was equal to 0.76 (standard error, SE, 0.015). The coefficient of determination (R²) of the linear regression between log hazard ratios on EFS and on OS was equal to 0.97 (SE 0.13). The intercept of the regression line was equal to -0.04 (SE 0.04) and the slope was equal to 0.80 (SE 0.21). The surrogate threshold effect was equal to 0.90. Using an alternative method of estimation of treatment effects, marginal proportional hazards models for EFS and OS, the R² was equal to 0.98 (SE 0.21), the intercept of the regression line was equal to -0.02 (SE 0.05), the slope was equal to 0.82 (SE 0.28), and the surrogate threshold effect was equal to 0.89. Further results for different subsets of patients, for example, those with activating FLT3 mutations, will be presented at the meeting. Interpretation: In this population of intensively-treated AML patients, there was a tight association between the treatment effect on EFS and OS, suggesting that the former can be used as a surrogate for the latter in clinical trials assessing the efficacy of new treatments. The surrogate threshold effect of about 0.90 and the regression analysis suggest that a reduction of at least 10% in the risk of an event would reliably predict a reduction of approximately 8% in the risk of death. Disclosures Schlenk: Celgene: Honoraria, Research Funding; Pfizer: Honoraria, Research Funding; Novartis: Honoraria, Research Funding; Teva: Honoraria, Research Funding; AROG: Honoraria, Research Funding; Amgen: Research Funding; Böhringer Ingelheim: Honoraria; Daiichi Sankyo: Membership on an entity's Board of Directors or advisory committees; Janssen: Honoraria, Membership on an entity's Board of Directors or advisory committees. Buyse:IDDI: Employment; Novartis: Research Funding. Burzykowski:IDDI: Employment; Novartis: Research Funding.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2015
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 5
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 30, No. 15_suppl ( 2012-05-20), p. TPS7610-TPS7610
    Abstract: TPS7610 Background: TG4010 is an immunotherapy product based on a poxvirus (MVA) coding for the MUC1 tumor-associated antigen and interleukin-2. A previous study, TG4010.09, which evaluated the combination of first-line chemotherapy with and without TG4010 in advanced NSCLC, achieved its primary endpoint based on 6-month progression-free survival (PFS) and showed that the pre-treatment level of activated Natural Killer (aNK) cells may be a potential predictive biomarker for TG4010 efficacy (E. Quoix et al., Lancet Oncol. 2011;12:1125-33). Methods: TIME is a double-blind phase IIb/III study comparing the combination of first-line therapy with TG4010 or placebo in stage IV NSCLC patients, Performance Status (PS) 0 or 1 with a MUC1 expressing tumor by immunohistochemistry. The Phase IIb part of the study aims at prospectively validating aNK level as a predictive biomarker with PFS as a primary endpoint, by comparing the two treatment arms in two subgroups defined according to the level of aNK cells at baseline (normal or high). Bayesian criteria, derived from the TG4010.09 study results, will be used to confirm that, with a large probability, the true hazard ratio is 〈 1 in patients with normal level of aNK cells and 〉 1 in patients with high level of aNK cells. The Phase III part of the study will then compare, by using a frequentist approach, the two treatment arms with overall survival as a primary endpoint in the patient population confirmed to be of interest in the Phase IIb part. The phase III part is powered to detect a 27% reduction in the hazard rate of death. Phase IIb and III parts of the study will enroll respectively 206 and 800 patients. A dynamic minimization procedure will be applied at randomization for histology, prescription of bevacizumab, type of chemotherapy, PS and center. If qualifying for, patients will receive maintenance therapy after chemotherapy according to labeling. The study TIME is open to recruitment and referenced in ClinicalTrials.gov with the identifier NCT01383148.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2012
    detail.hit.zdb_id: 2005181-5
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  • 6
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 21, No. 9 ( 2003-05-01), p. 1682-1687
    Abstract: Purpose: A meta-analysis of randomized trials in advanced ovarian cancer showed a longer survival with cyclophosphamide, doxorubicin, and cisplatin (CAP) than with cyclophosphamide and cisplatin (CP; P = .009). In contrast, the results of the large International Collaborative Ovarian Neoplasm Study (ICON2) showed no survival difference between CAP and carboplatin (P = .98). In this article, we show how these discrepant results can be reconciled through the estimation of expected survival curves. Materials and Methods: A proportional hazards model, fitted to the meta-analysis data, was used to construct the expected survival curve for each treatment arm of the ICON2 trial. Expected survival curves were compared with observed survival curves in the ICON2 trial at all time points using a nonparametric test. Results: The prognostic model for survival obtained in the meta-analysis included extent of residual disease, age, histologic grade, and International Federation of Gynecology and Obstetrics stage. When this model was applied to the ICON2 data, there was no difference between the expected and observed curves in the CAP arm. In contrast, the observed survival curve for carboplatin was far superior to the expected survival curve for CP (P 〈 .01). Conclusion: These analyses provide indirect evidence that better results are achieved with carboplatin alone at an optimally tolerated dose, compared with the CP combination at a cisplatin dose of 50 to 60 mg/m 2 . The expected survival may provide valuable insight when direct comparisons between randomized groups yield discrepant results across different studies.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2003
    detail.hit.zdb_id: 2005181-5
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  • 7
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2004
    In:  Journal of the Royal Statistical Society Series A: Statistics in Society Vol. 167, No. 1 ( 2004-02-01), p. 103-124
    In: Journal of the Royal Statistical Society Series A: Statistics in Society, Oxford University Press (OUP), Vol. 167, No. 1 ( 2004-02-01), p. 103-124
    Abstract: In many therapeutic areas, the identification and validation of surrogate end points is of prime interest to reduce the duration and/or size of clinical trials. Buyse and co-workers and Burzykowski and co-workers have proposed a validation strategy for end points that are either normally distributed or (possibly censored) failure times. In this paper, we address the problem of validating an ordinal categorical or binary end point as a surrogate for a failure time true end point. In particular, we investigate the validity of tumour response as a surrogate for survival time in evaluating fluoropyrimidine-based experimental therapies for advanced colorectal cancer. Our analysis is performed on data from 28 randomized trials in advanced colorectal cancer, which are available through the Meta-Analysis Group in Cancer.
    Type of Medium: Online Resource
    ISSN: 0964-1998 , 1467-985X
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2004
    detail.hit.zdb_id: 204794-9
    detail.hit.zdb_id: 1490715-X
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  • 8
    In: Gastric Cancer, Springer Science and Business Media LLC, Vol. 19, No. 1 ( 2016-1), p. 24-30
    Type of Medium: Online Resource
    ISSN: 1436-3291 , 1436-3305
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2016
    detail.hit.zdb_id: 1481763-9
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  • 9
    In: Journal of Mass Spectrometry, Wiley, Vol. 55, No. 8 ( 2020-08)
    Abstract: There is a trend in the analysis of shotgun proteomics data that aims to combine information from multiple search engines to increase the number of peptide annotations in an experiment. Typically, the degree of search engine complementarity and search engine agreement is visually illustrated by means of Venn diagrams that present the findings of a database search on the level of the nonredundant peptide annotations. We argue this practice to be not fit‐for‐purpose since the diagrams do not take into account and often conceal the information on complementarity and agreement at the level of the spectrum identification. We promote a new type of visualization that provides insight on the peptide sequence agreement at the level of the peptide‐spectrum match (PSM) as a measure of consensus between two search engines with nominal outcomes. We applied the visualizations and percentage sequence agreement to an in‐house data set of our benchmark organism, Caenorhabditis elegans , and illustrated that when assessing the agreement between search engine, one should disentangle the notion of PSM confidence and PSM identity. The visualizations presented in this manuscript provide a more informative assessment of pairs of search engines and are made available as an R function in the Supporting Information.
    Type of Medium: Online Resource
    ISSN: 1076-5174 , 1096-9888
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 2197367-2
    detail.hit.zdb_id: 1472468-6
    detail.hit.zdb_id: 7414-7
    SSG: 11
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    Wiley ; 2020
    In:  Journal of Mass Spectrometry Vol. 55, No. 8 ( 2020-08)
    In: Journal of Mass Spectrometry, Wiley, Vol. 55, No. 8 ( 2020-08)
    Abstract: Identification of peptides and proteins is a common task in mass spectrometry–based proteomics but often fails to deliver a comprehensive list of identifications. Downstream analysis, quantitative or qualitative, depends on the outcome of this process. Despite continuous improvement of computational methods, a large fraction of the screened peptides and/or proteins remains unidentified. We introduce here pacMASS , a method that de novo predicts the elemental composition of peptides and small proteins based on a single accurate mass, ie, the observed monoisotopic or average mass. This novel approach returns in a fast and memory efficient manner a limited number of elemental compositions per queried peptide or protein.
    Type of Medium: Online Resource
    ISSN: 1076-5174 , 1096-9888
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 2197367-2
    detail.hit.zdb_id: 1472468-6
    detail.hit.zdb_id: 7414-7
    SSG: 11
    SSG: 12
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