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  • 1
    In: Russian Journal of Infection and Immunity, SPb RAACI, Vol. 11, No. 2 ( 2021-03-24), p. 297-323
    Abstract: The novel coronavirus (SARS-CoV-2) pandemic, dubbed COVID-19, has become one of the most serious challenges for human populations in the vast majority of countries worldwide. Rapid spreading and increased mortality related to it required new approaches to manage epidemic processes on a global scale. One of such approaches was based on analyzing SARS-CoV-2 seroprevalence associated with COVID-19. Our aim was to summarize the results on assessing seroprevalence to the SARS-CoV-2 nucleocapsid antigen (Nc) in residents from 26 regions of the Russian Federation, carried out during the first wave of the COVID-19 epidemic.Materials and methods. Seroprevalence distribution was examined in 26 model regions of the Russian Federation according to the unified method developed by the Rospotrebnadzor with the participation of the Federal State Institution Saint Petersburg Pasteur Research Institute of Epidemiology and Microbiology. Such approach implied formation of a group of volunteer subjects in model geographic region who were tested by ELISA for anti-Nc serum antibody level in peripheral blood. Analyzed primary data obtained in separate regions were either accepted for publication or released.Results. The current paper finalizes the data obtained in all 26 regions of the Russian Federation. The total SARS-CoV-2 seroprevalence was 19.5 (10.0–25.6)% with the maximum and minimum value found in the Kaliningrad Region and the Republic of Crimea, respectively (50.2% vs. 4.3%). A pattern of age-related seroprevalence distribution indicates insignificant predominance of seroprevalence among subjects of 1–17 years old: 22.1 (13.1–31.8)%. Among COVID-19 convalescents positive for SARS-CoV Nc antibodies it reached 60.0 (40.0–73.3)%. The number of contact persons comprised 6285 subjects or 8.5% of total volunteer cohort, with the level of seroprevalence reaching up to 25.3 (17.95–35.8)%. A direct correlation was revealed between levels of seroprevalence in convalescent and contact volunteers. In addition, the reproductive number for SARS-CoV was calculated comprising 5.8 (4.3–8.5) suggesting that one convalescent subject can infect at least 4 healthy individuals. A high level of asymptomatic forms of COVID-19 among seropositive subjects was confirmed empirically comprising up to 93.6 (87.1–94.9)%.Conclusion. A single cross-sectional study performed during 2020 June–August timeframe allowed to assess pattern of sex- and agerelated COVID-19 seroprevalence for general population in 26 Russian Federation regions. The data obtained may serve as a basis for the longitudinal cohort investigation with serial subject sampling. The timing and duration of study will be determined by dynamics of ongoing COVID-19 epidemic.
    Type of Medium: Online Resource
    ISSN: 2313-7398 , 2220-7619
    Language: Unknown
    Publisher: SPb RAACI
    Publication Date: 2021
    detail.hit.zdb_id: 3046274-5
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  • 2
    In: Journal of microbiology, epidemiology and immunobiology, Central Research Institute for Epidemiology, Vol. 98, No. 4 ( 2021-09-21), p. 383-396
    Abstract: Introduction. SARS-CoV-2 can be transmitted by infected people without or with mild symptoms of acute respira-tory infection (ARI). Monitoring based on nucleic acid amplification techniques is used to measure the prevalence of ARI pathogens and to assess the effectiveness of preventive measures.The aim is to measure the prevalence of pathogens causing ARIs of viral etiology, influenza, and COVID-19 among individuals without ARI symptoms throughout age groups, to trace changes in the epidemic situation by weekly monitoring pathogens during the inter-epidemic period and at the beginning of a typical ARI epidemic season, to assess the effectiveness of medical masks for prevention of the above infections.Materials and methods. A total of 14,119 people (including 4,582 children) without ARI symptoms went through examination, including questionnaire surveys, in 26 regions of Russia from August to October 2020. Nasopharyn-geal and oropharyngeal swabs were tested by using AmpliSens ARVI-screen-FL, AmpliSens Influenza virus A/B-FL, and AmpliSens Cov-Bat-FL reagent kits (The Central Research Institute of Epidemiology of Rospotrebnadzor, Moscow).Results. 11.1% of the tested samples showed positive results; the rhinovirus prevailed (7.32%), while SARS-CoV-2 was detected in 1.66%. In autumn, the proportion of SARS-CoV-2 infected cases increased from 0.49% to 4.02% (p 0.001). The SARS-CoV-2 RNA concentration was up to 1010 copies/mL.Conclusions. Differences in the prevalence of SARS-CoV-2 and rhinovirus among the age groups and over time were found and analyzed. Using of medical masks reduced the risk of infection with respiratory viruses and with SARS-CoV-2 by 51% and 34%, respectively. In case of prolonged exposure to a COVID-19 patient, healthy people must use a respirator for more effective protection. The individuals whose work was associated with a high level of social contacts were infected more rarely than other individuals in the same age group (p = 0.001); this fact supports the importance of anti-epidemic measures and commitment to their adherence by people whose profession entails frequent social contacts.
    Type of Medium: Online Resource
    ISSN: 2686-7613 , 0372-9311
    Language: Unknown
    Publisher: Central Research Institute for Epidemiology
    Publication Date: 2021
    SSG: 12
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  • 3
    In: Viruses, MDPI AG, Vol. 13, No. 8 ( 2021-08-19), p. 1648-
    Abstract: The SARS-CoV-2 pandemic, which came to Russia in March 2020, is accompanied by morbidity level changes and can be tracked using serological monitoring of a representative population sample from Federal Districts (FDs) and individual regions. In a longitudinal cohort study conducted in 26 model regions of Russia, distributed across all FDs, we investigated the distribution and cumulative proportions of individuals with antibodies (Abs) to the SARS-CoV-2 nucleocapsid antigen (Ag), in the period from June to December 2020, using a three-phase monitoring process. In addition, during the formation of the cohort of volunteers, the number of seropositive convalescents, persons who had contact with patients or COVID-19 convalescents, and the prevalence of asymptomatic forms of infection among seropositive volunteers were determined. According to a uniform methodology, 3 mL of blood was taken from the examined individuals, and plasma was separated, from which the presence of Abs to nucleocapsid Ag was determined on a Thermo Scientific Multiascan FC device using the “ELISA anti-SARS-CoV-2 IgG” reagent set (prod. Scientific Center for Applied Microbiology and Biotechnology), in accordance with the developer’s instructions. Volunteers (74,158) were surveyed and divided into seven age groups (1–17, 18–29, 30–39, 40–49, 59–59, 60–69, and 70+ years old), among whom 14,275 were identified as having antibodies to SARS-CoV-2. The average percent seropositive in Russia was 17.8% (IQR: 8.8–23.2). The largest proportion was found among children under 17 years old (21.6% (IQR: 13.1–31.7). In the remaining groups, seroprevalence ranged from 15.6% (IQR: 8–21.1) to 18.0% (IQR: 13.4–22.6). During monitoring, three (immune) response groups were found: (A) groups with a continuous increase in the proportion of seropositive; (B) those with a slow rate of increase in seroprevalence; and (C) those with a two-phase curve, wherein the initial increase was replaced by a decrease in the percentage of seropositive individuals. A significant correlation was revealed between the number of COVID-19 convalescents and contact persons, and between the number of contacts and healthy seropositive volunteers. Among the seropositive volunteers, more than 93.6% (IQR: 87.1–94.9) were asymptomatic. The results show that the COVID-19 pandemic is accompanied by an increase in seroprevalence, which may be important for the formation of herd immunity.
    Type of Medium: Online Resource
    ISSN: 1999-4915
    Language: English
    Publisher: MDPI AG
    Publication Date: 2021
    detail.hit.zdb_id: 2516098-9
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  • 4
    In: Journal of microbiology, epidemiology and immunobiology, Central Research Institute for Epidemiology, Vol. 101, No. 1 ( 2024-03-09), p. 19-35
    Abstract: Introduction. The COVID-19 pandemic, etiologically related to SARS-CoV-2, was the longest-lasting pandemic for an acute respiratory disease and had a significant impact on demography, economics and politics globally. Experiences with this pandemic are significant for the sustainable development of human society. A detailed analysis of these experiences in epidemic control should include details of the pathogen evolution down to the regional level. The aim of the study was to establish the regularities of the COVID-19 epidemic process in connection with the change of the pathogen genetic variants on the territory of Primorsky Krai. Materials and methods. A retrospective epidemiological analysis of COVID-19 incidence and dynamics of circulation of SARS-CoV-2 genetic variants during the pandemic of this disease (11.03.2020–05.05.2023) in Primorsky Krai was carried out. Data was gathered from the Department of Rospotrebnadzor in Primorsky Krai, the Centre of Hygiene and Epidemiology in Primorsky Krai, as well as the G.P. Somov Research Institute of Epidemiology and Microbiology of the Russian Federation and Russian Platform for Aggregation of Information on Virus Genomes (VGARus). In particular, 1055 nucleotide sequences of full-length SARS-CoV-2 genomes from Primorsky Krai, among which 553 were sequenced at the G.P. Somov Research Institute of Epidemiology and Microbiology were included in analysis. Results. When analyzing the epidemic dynamics of COVID-19 in Primorsky Krai (2020–2023), 7 rises in incidence with different clinical and epidemiological symptoms depending on the genetic variants of the pathogen were identified. At the beginning of the pandemic in Primorsky Krai, as well as throughout Russia, Wuhan-like variants of SARS-CoV-2 were predominant, though later, Delta and Omicron genetic variants were in the majority. By the end of April — beginning of May 2023, the proportion of Omicron sub-variants (XBB.1.9.2 and XBB.1.16) in Primorsky Krai was higher than the Russian average and comparable to that in neighboring countries (Republic of Korea and Japan). Conclusion. Due to the ongoing evolution of SARS-CoV-2, the possibility of the emergence of new pathogens, the peculiarities of the geographical location as well as political and economic importance of Primorsky Krai, it is necessary to consistently improve regional capabilities for operational molecular virological monitoring.
    Type of Medium: Online Resource
    ISSN: 2686-7613 , 0372-9311
    Language: Unknown
    Publisher: Central Research Institute for Epidemiology
    Publication Date: 2024
    SSG: 12
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  • 5
    In: Acta Biomedica Scientifica, FSPSI SCFHHRP, Vol. 6, No. 5 ( 2021-11-23), p. 253-273
    Abstract: The aim : to study the structure and dynamics of population immunity to SARSCoV-2 of the population of the Southern Regions of the Far East (SRFE): Khabarovsk, Primorsky Krai and Amur Region during the COVID-19 epidemic in 2020. Materials and methods . The work was carried out according to the program for assessing population immunity to SARS -CoV-2 of the population of the Russian Federation according to the methodology developed by the Rospotrebnadzor with the  participation of the St.  Petersburg Pasteur Institute. The study was approved by  the  ethical committee of the St.  Petersburg Pasteur Institute. The selection of participants was carried out by a questionnaire method using cloud technologies. The  volunteers were randomized by age by stratification into 7  age groups: 1–17, 18–29, 30–39, 40–49, 50–59, 60–69, 70+ years old. Territorial randomization consisted in limiting the engaging of volunteers – no more than 30 people from one enterprise. After the initial cross-sectional study, a 3-stage seromonitoring was carried out, in which the same volunteers participated. Antibodies to the SARS-CoV-2 nucleocapsid were determined in peripheral blood serum by the enzyme immunoassay using an appropriate set of reagents produced by the State Scientific Center for Medical and Biological Sciences of the Rospotrebnadzor (Obolensk). Statistical analysis was performed using the Excel package. The confidence interval for the proportion was calculated using the A. Wald, J. Wolfowitz method with A. Agresti, B.A. Coull’s correction. The statistical significance of the differences was calculated online using a specialized calculator. The statistical significance of the differences was assessed with a probability of p˂ 0.05, unless otherwise indicated. Results . In a comparative analysis, the highest morbidity was observed in the Khabarovsk Territory, the lowest – in the Primorsky Territory. The level of seroprevalence among the population of the region was 19.6 % (95 % CI: 18.2–21.1) in  the  Khabarovsk Territory, 19.6  % (95  %  CI: 18.1–21.2) in the Primorsky Territory19,6 % and 45,5 % (95 % CI: 43.7–47.3) in the Amur region. The highest seroprevalence was noted among 1–17 years old children, mainly due to the subgroup of 14–17-years-olds. The smallest proportion of seropositive was found among 40–49-year-olds in the Khabarovsk Territory (14.7 %, 95 % CI: 11.2–18.6), 18–28-yearolds in the Primorsky Territory (13.3 %, 95 % CI: 10.0–17.1) and 30–39-year-olds in the Amur Region (36.3  %, 95%  CI:  31.7–41.6). No statistically significant dependence of  seroprevalence on territorial and occupational factors has been established, with the exception of an increase in the proportion of seropositive medical workers in Primorsky Territory. In the process of 3-stage seromonitoring, a regular increase in the proportion of seropositive people was revealed in all SRFE. The resulting tendency is correctly described by a second-order polynomial. A relationship was revealed between the number of convalescents and persons in contact with them, which made it possible to calculate the base reproductive number (R 0 ) in the range from 1.4 (Primorsky Territory) to 2.4 (Amur Region). Analysis of seroprevalent volunteers showed that the number of asymptomatic individuals varied from 94.1 % (95 % CI: 92.8–95.3) to 98.3 % (95 % CI: 98.8–99.2). This indicates that most of the volunteers had COVID-19 asymptomatically. Conclusions . A comparative study showed the prevalence of seroprevalence in the Amur Region compared with the Khabarovsk and Primorsky Territories. The relationship between the number of convalescents and persons in contact with them was noted. The value of the base R 0 is calculated. It has been shown that more than 90 % of seropositive individuals in the COVID-10 SRFE were asymptomatic.
    Type of Medium: Online Resource
    ISSN: 2587-9596 , 2541-9420
    Language: Unknown
    Publisher: FSPSI SCFHHRP
    Publication Date: 2021
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  • 6
    In: Problems of Particularly Dangerous Infections, Russian Research Anti-Plague Institute Microbe, , No. 4 ( 2022-01-26), p. 67-78
    Abstract: The aim of the study was to analyze the epizootiological and epidemiological situation in the Primorsky Territory (1919–2020) and to zone the administrative districts in regard to anthrax. Materials and methods. Accounting and reporting documents, information and archival materials were collected and analyzed, statistical reference books and literature sources were used. A comprehensive epizootiological and epidemiological survey of 12 supposed places of anthrax burials and cattle burial grounds was carried out, and their biological hazard assessed. Results and discussion. Within the framework of updating the Cadastre of stationary potentially hazardous as regards anthrax areas in the Russian Federation (2005), the number of infected farm animals and human cases was specified: according to official data, over the period of 1930–1979, the disease in 173 animals and 34 people with five deaths was registered in 82 stationary unfavorable for anthrax areas of 22 municipalities of the region. Together with the veterinary service of the region, an audit of 12 supposed places of anthrax burials in seven districts of the region was conducted. Based on the results of a comprehensive epizootiological and epidemiological survey, high biological hazard was established for 2 and potential one – for 1 anthrax burials. The culture of Bacillus anthracis isolated on the territory of Primorsky Territory belongs to one of the canonical SNP clusters – A.Br.008/009 of the global genetic line A (subgroup A1). Five criteria for assessing the epizootiological and epidemiological disadvantage for anthrax and the ranking of indicators of the administrative territories in the region have been determined. Zoning of the administrative territories of the region according to risk of anthrax has been carried out. Prophylactic anti-epizootic and anti-epidemic measures have been put forward.
    Type of Medium: Online Resource
    ISSN: 2658-719X , 0370-1069
    Language: Unknown
    Publisher: Russian Research Anti-Plague Institute Microbe
    Publication Date: 2022
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  • 7
    In: Bulletin Physiology and Pathology of Respiration, Far Eastern Scientific Center Of Physiology and Pathology of Respiration, , No. 78 ( 2020-12-21), p. 8-22
    Abstract: Aim. To reveal peculiarities of acute respiratory viral infections (ARVI) incidence among population of the Far Eastern Federal District depending on viral etiology during two epidemic seasons (2017-2018 and 2018-2019). Materials and methods. Method of epidemiological analysis by means of ARVI incidence with weekly epidemic thresholds as utilized. Laboratory diagnosis of respiratory viruses was carried out by applying RT-PCR method and test-kits of the Central Research Institute of Epidemiology. In order to determine relations between ARVI incidence and viral etiological structure of ARVI correlation and regression analysis was performed. Results. Identical epidemical tendencies with differences in ARVI incidence intensity were registered in the evaluated constituent entities of the Russian Far East. Utmost intensity of epidemic process was revealed in the Republic Sakha (Yakutia) and Sakhalin Oblast. In the south regions (Khabarovsk and Primorsky Krai, Amur Oblast) ARVI incidence, occasionally excessing epidemic threshold was lower. Territorial and time irregularity is peculiar for etiology of infections in the Russian Far East. During the epidemic season of 2017-2018 statistically significant prevalence was determined for the influenza virus B in Primorsky and Khabarovsk Krai, influenza virus A(H3N2) ‒ in the Sakhalin Oblast, respiratory syncytial virus ‒ in the Republic Sakha (Yakutia), rhinoviruses were dominant in the Amur Oblast. During the 2018-2019 epidemic season influenza virus A(H1N1)pdm09 was mostly prevalent in most of the constituent entities of the Russian Far East. Compared to the other regions of the Far Eastern Federal District in the Amur Oblast were revealed differences in circulation of respiratory viruses predominantly of non-influenza origin during two observed epidemic seasons. Conclusion. Constant evaluation of ARVI epidemics under the conditions of constantly changing landscape of circulating viruses in a particular region can be useful for determination of strategies and tactics of epidemiological response.
    Type of Medium: Online Resource
    ISSN: 1998-5029
    Language: Unknown
    Publisher: Far Eastern Scientific Center Of Physiology and Pathology of Respiration
    Publication Date: 2020
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  • 8
    In: Problems of Particularly Dangerous Infections, Russian Research Anti-Plague Institute Microbe, , No. 3 ( 2021-10-23), p. 51-59
    Abstract: The aim of the study was to analyze the state of stationary potentially hazardous areas as regards anthrax in the Primorsky Territory and update the Cadastre of stationary potentially hazardous as regards anthrax areas (SPHA) of the Russian Federation (2005). Materials and methods. The collection and survey of accounting and reporting documents, archival and informational materials, records on anthrax from veterinary institutions, Rospotrebnadzor, municipalities by the 72 registered anthrax SPHA of the Primorsky Territory have been carried out. The reference book of the Russian Soviet Federative Socialist Republic’s settlements endemic for anthrax (1976), the Cadastre of the stationary potentially hazardous as regards anthrax areas in the Russian Federation (2005) were used. Results and discussion. The description of anthrax cases in the Primorsky Territory goes back to 1894, the official registration of the disease – since 1919. The last cases of the disease in farm animals and population were noted in Kavalerovsky and Oktyabrsky districts in 1979. When updating the SPHA (2005), information on 82 dormant sites of the Territory in 22 municipal and six urban districts was clarified. In six districts of the Territory, anthrax was not officially registered. Most of the SPHAs are centered on the Khanka plain, where the network of transport routes, the largest number of livestock and population are concentrated. The data on the number of sick animals and people over a period of 1919–1929 have not survived, and in the period between 1980 and 2020 anthrax was not reported in the region. 173 animals and 34 humans were diagnosed with anthrax in 1929–1979 in Primorye. High epizootic activity was noted in the period of 1919–1941. In the Asian part of the Russian Federation, Primorsky Territory belongs to the regions under a mild epizootic and epidemiological disadvantage as regards anthrax. Monitoring of anthrax has shown that the persistence of the pathogen in the soils of ten districts of the Territory could be facilitated by the absence of soil toxicity (86,8 %) and an average nutritional value (23,5 %) in relation to the anthrax microbe.
    Type of Medium: Online Resource
    ISSN: 2658-719X , 0370-1069
    Language: Unknown
    Publisher: Russian Research Anti-Plague Institute Microbe
    Publication Date: 2021
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