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  • 1
    In: Database, Oxford University Press (OUP), Vol. 2019 ( 2019-01-01)
    Abstract: Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency–Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.
    Type of Medium: Online Resource
    ISSN: 1758-0463
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2019
    detail.hit.zdb_id: 2496706-3
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  • 2
    Online Resource
    Online Resource
    Wiley ; 2023
    In:  Environmental Toxicology and Chemistry Vol. 42, No. 9 ( 2023-09), p. 1937-1945
    In: Environmental Toxicology and Chemistry, Wiley, Vol. 42, No. 9 ( 2023-09), p. 1937-1945
    Abstract: Although stable isotope analysis (SIA) is widely used to address ecological research questions, its application in an ecotoxicological context has been limited. Recent studies have proposed an effect of chemical stressors on an organism's isotope signature, questioning the use of SIA in food webs impacted by toxicants. Against this background, the present study investigates 1) whether trophic enrichment factors (TEFs; i.e., the offset in stable isotope signatures of a consumer to its diet) are altered by the neonicotinoid thiacloprid, and 2) whether tracking toxicant effects on an organism's diet composition (i.e., indirect effect) with SIA fits direct observations of consumption. To address the former, the amphipod Gammarus fossarum (Koch) was exposed to three levels (0, 0.75, and 5 µg L –1 ) of thiacloprid and fed with either black alder leaves or Baetis rhodani (Pictet) larvae over 6 weeks ( n  = 35). The thiacloprid‐induced changes in TEFs that we found were statistically significant but small compared with other factors (e.g., resource quality, consumer, and physiological condition) and thus likely of minor importance. To address the latter issue, gammarids were exposed to two levels of thiacloprid (0 and 0.75 µg L –1 ) and fed with either black alder leaves, live B. rhodani larvae, or both over 2 weeks ( n  = 10). Dietary proportions as suggested by SIA were indeed in agreement with those derived from direct observation of consumption. The present study consequently suggests that SIA is as a robust tool to detect indirect toxicant effects especially if TEFs are assessed in parallel. Environ Toxicol Chem 2023;42:1937–1945. © 2022 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.
    Type of Medium: Online Resource
    ISSN: 0730-7268 , 1552-8618
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2023
    detail.hit.zdb_id: 2027441-5
    SSG: 12
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