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Identification of a group of shigella-like isolates as Shigella boydii 20

Grimont, Francine ; Lejay-Collin, Monique ; Talukder, Kaisar A. ; [et al.]

Microbiology Society ; 2007

In: Journal of Medical Microbiology Vol. 56, No. 6 ( 2007-06-01), p. 749-754

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In: Journal of Medical Microbiology, Microbiology Society, Vol. 56, No. 6 ( 2007-06-01), p. 749-754

Abstract: Infections by Shigella species are an important cause of diarrhoeal disease worldwide. Of 4198 Shigella isolates received by the French National Reference Centre for Escherichia coli and Shigella , 180 from patients with diarrhoea and dysentery in 2000–2004 did not react with any available polyclonal rabbit antisera used to identify the established Shigella serogroups. This study describes the molecular and phenotypic characteristics of these isolates in seroagglutination tests, molecular serotyping ( rfb -RFLP and fliC -RFLP), ribotyping, detection of invasivity and enterotoxins genes, and antibiotic sensitivity. All isolates gave biochemical reactions typical of Shigella boydii , were mannitol-positive and indole-negative. They all carried invasion-associated genes, enterotoxin 2 [ShET-2] and an IS 630 sequence. They had a unique ribotype that was distinct from all other Shigella and E. coli patterns. Further characterization by rfb -RFLP clearly distinguished this serogroup from all other Shigella or E. coli O-groups. The fliC -RFLP pattern corresponded to P4, an F-pattern which is associated with 10 different serogroups of S. boydii . A new antiserum prepared against strain 00-977 agglutinated all 180 isolates and cross-agglutination and absorption studies with anti-00-977 serum and anti-CDC 99-4528 (reference for the newly described S. boydii serogroup 20) serum showed identical antigenic structure. Furthermore, strains 00-977 and CDC 99-4528 had the same molecular serotype, ribotype and virulence genes.

Type of Medium: Online Resource

ISSN: 0022-2615 , 1473-5644

URL: Article

DOI: 10.1099/jmm.0.46818-0

RVK:

XA 55020

Language: English

Publisher: Microbiology Society

Publication Date: 2007

detail.hit.zdb_id: 2083944-3

SSG: 12

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2

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The genus Serratia revisited by genomics

Williams, David J. ; Grimont, Patrick A. D. ; Cazares, Adrián ; [et al.]

Springer Science and Business Media LLC ; 2022

In: Nature Communications Vol. 13, No. 1 ( 2022-09-03)

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In: Nature Communications, Springer Science and Business Media LLC, Vol. 13, No. 1 ( 2022-09-03)

Abstract: The genus Serratia has been studied for over a century and includes clinically-important and diverse environmental members. Despite this, there is a paucity of genomic information across the genus and a robust whole genome-based phylogenetic framework is lacking. Here, we have assembled and analysed a representative set of 664 genomes from across the genus, including 215 historic isolates originally used in defining the genus. Phylogenomic analysis of the genus reveals a clearly-defined population structure which displays deep divisions and aligns with ecological niche, as well as striking congruence between historical biochemical phenotyping data and contemporary genomics data. We highlight the genomic, phenotypic and plasmid diversity of Serratia , and provide evidence of different patterns of gene flow across the genus. Our work provides a framework for understanding the emergence of clinical and other lineages of Serratia .

Type of Medium: Online Resource

ISSN: 2041-1723

URL: Article

DOI: 10.1038/s41467-022-32929-2

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2022

detail.hit.zdb_id: 2553671-0

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Global phylogeography and evolutionary history of Shigella dysenteriae type 1

Njamkepo, Elisabeth ; Fawal, Nizar ; Tran-Dien, Alicia ; [et al.]

Springer Science and Business Media LLC ; 2016

In: Nature Microbiology Vol. 1, No. 4 ( 2016-03-21)

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In: Nature Microbiology, Springer Science and Business Media LLC, Vol. 1, No. 4 ( 2016-03-21)

Type of Medium: Online Resource

ISSN: 2058-5276

URL: Article

DOI: 10.1038/nmicrobiol.2016.27

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2016

detail.hit.zdb_id: 2845610-5

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Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1

Njamkepo, Elisabeth ; Fawal, Nizar ; Tran-Dien, Alicia ; [et al.]

Springer Science and Business Media LLC ; 2016

In: Nature Microbiology Vol. 1, No. 11 ( 2016-10-03)

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In: Nature Microbiology, Springer Science and Business Media LLC, Vol. 1, No. 11 ( 2016-10-03)

Type of Medium: Online Resource

ISSN: 2058-5276

URL: Article

DOI: 10.1038/nmicrobiol.2016.209

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2016

detail.hit.zdb_id: 2845610-5

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Reappraisal of the taxonomy of the Streptococcus bovis/Streptococcus equinus complex and related species: description of Streptococcus gallolyticus subsp. gallolyticus subsp. nov., S. gallolyticus subsp. macedonicus subsp. nov. and S. gallolyticus subsp. pasteurianus subsp. nov.

Schlegel, Laurent ; Grimont, Francine ; Ageron, Elisabeth ; [et al.]

Microbiology Society ; 2003

In: International Journal of Systematic and Evolutionary Microbiology Vol. 53, No. 3 ( 2003-05-01), p. 631-645

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In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 53, No. 3 ( 2003-05-01), p. 631-645

Type of Medium: Online Resource

ISSN: 1466-5026 , 1466-5034

URL: Article

DOI: 10.1099/ijs.0.02361-0

Language: English

Publisher: Microbiology Society

Publication Date: 2003

detail.hit.zdb_id: 215062-1

detail.hit.zdb_id: 2056611-6

SSG: 12

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Legionella taurinensis sp. nov., a new species antigenically similar to Legionella spiritensis

Lo Presti, François ; Riffard, Serge ; Meugnier, Helene ; [et al.]

Microbiology Society ; 1999

In: International Journal of Systematic and Evolutionary Microbiology Vol. 49, No. 2 ( 1999-04-01), p. 397-403

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In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 49, No. 2 ( 1999-04-01), p. 397-403

Type of Medium: Online Resource

ISSN: 1466-5026 , 1466-5034

URL: Article

DOI: 10.1099/00207713-49-2-397

Language: English

Publisher: Microbiology Society

Publication Date: 1999

detail.hit.zdb_id: 215062-1

detail.hit.zdb_id: 2056611-6

SSG: 12

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Phylogenetic analysis of the genera Proteus, Morganella and Providencia by comparison of rpoB gene sequences of type and clinical strains suggests the reclassification of Proteus myxofaciens in a new genus, Cosenzaea gen. nov., as Cosenzaea myxofaciens comb. nov.

Giammanco, Giovanni M. ; Grimont, Patrick A. D. ; Grimont, Francine ; [et al.]

Microbiology Society ; 2011

In: International Journal of Systematic and Evolutionary Microbiology Vol. 61, No. 7 ( 2011-07-01), p. 1638-1644

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In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 61, No. 7 ( 2011-07-01), p. 1638-1644

Abstract: Phylogenetic analysis of partial rpoB gene sequences of type and clinical strains belonging to different 16S rRNA gene-fingerprinting ribogroups within 11 species of enterobacteria of the genera Proteus , Morganella and Providencia was performed and allowed the definition of rpoB clades, supported by high bootstrap values and confirmed by ≥2.5 % nucleotide divergence. None of the resulting clades included strains belonging to different species and the majority of the species were confirmed as discrete and homogeneous. However, more than one distinct rpoB clade could be defined among strains belonging to the species Proteus vulgaris (two clades), Providencia alcalifaciens (two clades) and Providencia rettgeri (three clades), suggesting that some strains represent novel species according to the genotypes outlined by rpoB gene sequence analysis. Percentage differences between the rpoB gene sequence of the type strain of Proteus myxofaciens and other members of the same genus (17.3–18.9 %) were similar to those calculated amongst strains of the genus Providencia (16.4–18.7 %), suggesting a genetic distance at the genus-level between Proteus myxofaciens and the rest of the Proteus–Providencia group. Proteus myxofaciens therefore represents a member of a new genus, for which the name Cosenzaea gen. nov., is proposed.

Type of Medium: Online Resource

ISSN: 1466-5026 , 1466-5034

URL: Article

DOI: 10.1099/ijs.0.021964-0

Language: English

Publisher: Microbiology Society

Publication Date: 2011

detail.hit.zdb_id: 215062-1

detail.hit.zdb_id: 2056611-6

SSG: 12

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Interstitial pulmonary inflammation due to Microbacterium sp. after heart transplantation

Giammanco, Giovanni M. ; Pignato, Sarina ; Grimont, Patrick A. D. ; [et al.]

Microbiology Society ; 2006

In: Journal of Medical Microbiology Vol. 55, No. 3 ( 2006-03-01), p. 335-339

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In: Journal of Medical Microbiology, Microbiology Society, Vol. 55, No. 3 ( 2006-03-01), p. 335-339

Type of Medium: Online Resource

ISSN: 0022-2615 , 1473-5644

URL: Article

DOI: 10.1099/jmm.0.46219-0

RVK:

XA 55020

Language: English

Publisher: Microbiology Society

Publication Date: 2006

detail.hit.zdb_id: 2083944-3

SSG: 12

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Persistent Endemicity of Salmonella bongori 48:z 35 :− in Southern Italy: Molecular Characterization of Human, Animal, and Environmental Isolates

Giammanco, Giovanni M. ; Pignato, Sarina ; Mammina, Caterina ; [et al.]

American Society for Microbiology ; 2002

In: Journal of Clinical Microbiology Vol. 40, No. 9 ( 2002-09), p. 3502-3505

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In: Journal of Clinical Microbiology, American Society for Microbiology, Vol. 40, No. 9 ( 2002-09), p. 3502-3505

Abstract: From 1984 to 1999, we collected 31 isolates of the rare serovar Salmonella bongori 48:z 35 :− in southern Italy. Twenty-four of the isolates were from cases of acute enteritis in humans. Pulsed-field gel electrophoresis analysis showed that all but one of our isolates were at least 80% similar. Our findings suggest that genetically related S. bongori 48:z 35 :− strains are endemically circulating in southern Italy.

Type of Medium: Online Resource

ISSN: 0095-1137 , 1098-660X

URL: Article

DOI: 10.1128/JCM.40.9.3502-3505.2002

RVK:

XA 10000

Language: English

Publisher: American Society for Microbiology

Publication Date: 2002

detail.hit.zdb_id: 1498353-9

SSG: 12

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Genotypic and Phenotypic Characteristics of Corynebacterium diphtheriae Strains Isolated from Patients in Belarus during an Epidemic Period

Titov, Leonid ; Kolodkina, Valentina ; Dronina, Alina ; [et al.]

American Society for Microbiology ; 2003

In: Journal of Clinical Microbiology Vol. 41, No. 3 ( 2003-03), p. 1285-1288

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In: Journal of Clinical Microbiology, American Society for Microbiology, Vol. 41, No. 3 ( 2003-03), p. 1285-1288

Abstract: One hundred two Corynebacterium diphtheriae strains (93 of the gravis biotype and nine of the mitis biotype) isolated from clinical cases during the Belarus diphtheria epidemic were characterized by biotyping, toxigenicity testing by the Elek test and an indirect hemagglutination assay, phage typing, and ribotyping. The gravis biotype strains were characterized as high and medium toxin producers, and strains of biotype mitis were characterized as low and medium toxin producers. Most strains (82 of 102) were distributed among five phage types. Seventy-two strains (64 of the gravis biotype and 8 of the mitis biotype) belonged to phage type VI ls5,34add. Hybridization of genomic DNA digested with Bst EII and Pvu II revealed five ribotype patterns, namely, D1, D4, D6, D7, and D13. The majority of gravis biotype strains belonged to ribotypes D1 (49 of 93) and D4 (33 of 93) and included one clonal group of C . diphtheriae . This clone predominated in all regions in Belarus. There was a statistical association between ribotypes and phage types but not between ribotypes and levels of toxin production.

Type of Medium: Online Resource

ISSN: 0095-1137 , 1098-660X

URL: Article

DOI: 10.1128/JCM.41.3.1285-1288.2003

RVK:

XA 10000

Language: English

Publisher: American Society for Microbiology

Publication Date: 2003

detail.hit.zdb_id: 1498353-9

SSG: 12

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Kooperativer Bibliotheksverbund

Berlin Brandenburg