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  • 1
    In: Cell Research, Springer Science and Business Media LLC, Vol. 32, No. 4 ( 2022-04), p. 383-400
    Abstract: Pig epiblast-derived pluripotent stem cells are considered to have great potential and broad prospects for human therapeutic model development and livestock breeding. Despite ongoing attempts since the 1990s, no stably defined pig epiblast-derived stem cell line has been established. Here, guided by insights from a large-scale single-cell transcriptome analysis of pig embryos from embryonic day (E) 0 to E14, specifically, the tracing of pluripotency changes during epiblast development, we developed an in vitro culture medium for establishing and maintaining stable pluripotent stem cell lines from pig E10 pregastrulation epiblasts (pgEpiSCs). Enabled by chemical inhibition of WNT-related signaling in combination with growth factors in the FGF/ERK, JAK/STAT3, and Activin/Nodal pathways, pgEpiSCs maintain their pluripotency transcriptome features, similar to those of E10 epiblast cells, and normal karyotypes after more than 240 passages and have the potential to differentiate into three germ layers. Strikingly, ultradeep in situ Hi-C analysis revealed functional impacts of chromatin 3D-spatial associations on the transcriptional regulation of pluripotency marker genes in pgEpiSCs. In practice, we confirmed that pgEpiSCs readily tolerate at least three rounds of successive gene editing and generated cloned gene-edited live piglets. Our findings deliver on the long-anticipated promise of pig pluripotent stem cells and open new avenues for biological research, animal husbandry, and regenerative biomedicine.
    Type of Medium: Online Resource
    ISSN: 1001-0602 , 1748-7838
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2022
    detail.hit.zdb_id: 2082402-6
    SSG: 12
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  • 2
    In: Forests, MDPI AG, Vol. 13, No. 7 ( 2022-07-12), p. 1093-
    Abstract: Pipeline corridors have been rapidly increasing in length and density because of the ever growing demand for crude oil and natural gas resources in hydrocarbon-rich permafrost regions. Pipeline engineering activities have significant implications for the permafrost environment in cold regions. Along these pipeline corridors, the shrubification in the right-of-way (ROW) has been extensively observed during vegetation recovery. However, the hydrothermal mechanisms of this ROW shrubification have seldom been studied and thus remain poorly understood. This paper reviews more than 112 articles mainly published from 2000 to 2022 and focuses on the hydrothermal mechanisms of shrubification associated with environmental changes induced by the rapidly degrading permafrost from pipeline construction and around the operating pipelines under a warming climate. First, the shrubification from pipeline construction and operation and the ensuing vegetation clearance are featured. Then, key permafrost-related ROW shrubification mechanisms (e.g., from the perspectives of warmer soil, soil moisture, soil type, soil nutrients, topography and landscapes, and snow cover) are discussed. Other key influencing factors on these hydrothermal and other mechanisms are hierarchically documented as well. In the end, future research priorities are identified and proposed. We call for prioritizing more systematic and in-depth investigations and surveys, laboratory testing, long-term field monitoring, and numerical modeling studies of the ROW shrubification along oil and gas pipelines in permafrost regions, such as in boreal and arctic zones, as well as in alpine and high-plateau regions. This review can improve our understanding of shrubification mechanisms under pipeline disturbances and climate changes and help to better manage the ecological environment along pipeline corridors in permafrost regions.
    Type of Medium: Online Resource
    ISSN: 1999-4907
    Language: English
    Publisher: MDPI AG
    Publication Date: 2022
    detail.hit.zdb_id: 2527081-3
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  • 3
    Online Resource
    Online Resource
    National Library of Serbia ; 2021
    In:  Thermal Science Vol. 25, No. 2 Part A ( 2021), p. 869-877
    In: Thermal Science, National Library of Serbia, Vol. 25, No. 2 Part A ( 2021), p. 869-877
    Abstract: Based on one planned arctic natural gas pipe-line engineering which will cross continuous, discontinuous, sporadic and non-permafrost areas from north to south, with different pipe-line temperatures set, a thermal model of the interac-tion between pipe-line and permafrost is established to investigate the influence of pipe-lines on the freezing and thawing of frozen soil around pipe-line and thermal stability of permafrost. The results show that different pipe-line temperatures influ?ence the permafrost table greatly. Especially in discontinuous permafrost areas the permafrost table is influenced in both positive temperature and negative tempera?ture. The warm gas pipe-line of 5? could decrease the value of permafrost table about 1 to 3 times pipe diameter and aggravate the degradation of permafrost around pipe-line; ?1? and ?5? chilled gas pipe-line can effectively improve the permafrost table and maintain the temperature stability of frozen soil, but the temperature of soils below pipe-line of ?5? decreases obviously, which may lead to frost heave hazards. In terms of thermal stability around pipe-line, it is advised that transporting temperature of ?1? is adopted in continuous permafrost area; in discontinuous permafrost area pipe-line could operate above freezing in the summer months with the station discharge temperature trending the ambient air temperature, but the discharge temperature must be maintained as ?1? through?out the winter months; in seasonal freezing soil area chilled pipe-line may cause frost heave, therefore, pipe-line should run in positive temperature without extra temperature cooling control.
    Type of Medium: Online Resource
    ISSN: 0354-9836 , 2334-7163
    Language: English
    Publisher: National Library of Serbia
    Publication Date: 2021
    detail.hit.zdb_id: 2241319-4
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  • 4
    In: Electronics, MDPI AG, Vol. 12, No. 14 ( 2023-07-21), p. 3175-
    Abstract: Deep-learning-based automatic modulation recognition (AMR) has recently attracted significant interest due to its high recognition accuracy and the lack of a need to manually set classification standards. However, it is extremely challenging to achieve a high recognition accuracy in increasingly complex channel environments and balance the complexity. To address this issue, we propose a multi-modal AMR neural network model with SNR segmentation called M-LSCANet, which integrates an SNR segmentation strategy, lightweight residual stacks, skip connections, and an attention mechanism. In the proposed model, we use time domain I/Q data and constellation diagram data only in medium and high signal-to-noise (SNR) regions to jointly extract the signal features. But for the low SNR region, only I/Q signals are used. This is because constellation diagrams are very recognizable in the medium and high SNRs, which is conducive to distinguishing high-order modulation. However, in the low SNR region, excessive similarity and the blurring of constellations caused by heavy noise will seriously interfere with modulation recognition, resulting in performance loss. Remarkably, the proposed method uses lightweight residuals stacks and rich ski connections, so that more initial information is retained to learn the constellation diagram feature information and extract the time domain features from shallow to deep, but with a moderate complexity. Additionally, after feature fusion, we adopt the convolution block attention module (CBAM) to reweigh both the channel and spatial domains, further improving the model’s ability to mine signal characteristics. As a result, the proposed approach significantly improves the overall recognition accuracy. The experimental results on the RadioML 2016.10B public dataset, with SNR ranging from −20 dB to 18 dB, show that the proposed M-LSCANet outperforms existing methods in terms of classification accuracy, achieving 93.4% and 95.8% at 0 dB and 12 dB, respectively, which are improvements of 2.7% and 2.0% compared to TMRN-GLU. Moreover, the proposed model exhibits a moderate parameter number compared to state-of-the-art methods.
    Type of Medium: Online Resource
    ISSN: 2079-9292
    Language: English
    Publisher: MDPI AG
    Publication Date: 2023
    detail.hit.zdb_id: 2662127-7
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  • 5
    Online Resource
    Online Resource
    American Society of Clinical Oncology (ASCO) ; 2021
    In:  Journal of Clinical Oncology Vol. 39, No. 15_suppl ( 2021-05-20), p. e20523-e20523
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 39, No. 15_suppl ( 2021-05-20), p. e20523-e20523
    Abstract: e20523 Background: Lung adenosquamous carcinoma (ASC) is a relatively uncommon malignancy that comprised of both adenocarcinoma component (ACC) and squamous cell carcinoma component (SCCC). We have reported its genomic profile, evolutionary origin, and clinical management. Information of tumor immune microenvironment (TIME) of ASC, including tumor mutation burden (TMB), tumor-infiltrating lymphocytes (TILs), T cell receptors (TCR) repertoire, and PD-L1 status remains scarce. Methods: 28 Surgical ASCs were collected and identified by immunohistochemistry (IHC). ACC and SCCC were obtained separately by microdissection. Targeted sequencing was performed for the two components using a 1021-gene-panel independently. TMB of ACC and SCCC were independently calculated. TMB of ASC calculation was based on aggregation (removing duplicates) of non-synonymous mutations from both ACC and SCCC. TILs and PD-L1were examined by multiplex immunohistochemistry (mIHC). The infiltration level of immune cells in tumor, stroma, and total region (named by both tumor and stroma regions) was investigated. T cell receptor (TCR) repertoires were sequenced and clonality and Shannon index were calculated. Results: SCCC (7.2 mutations/Mb) had a higher TMB level than ACC (6.5 muts/Mb), indicating the immunogenic heterogeneity between the different pathological components. The TMB value of ACC and SCCC were modestly proportional (Spearman r = 0.56, p = 0.001), which was related to the clonal origin. SCCC TMB was lower than the archival LUSC (10.1 muts/Mb), and ACC TMB was similar to LUAD (4.3 muts/Mb). The TMB of ASC was higher than LUAD and close to LUSC. The nonidentical TIL level in ACC and SCCC showed infiltration heterogeneity. For tumor region, CD3+ total T cells, CD4+ T cells, CD8+ T cells, and PD1+ cells accounted for the most proportion of immune cells, with no differences between ACC and SCCC; FOXP3+ CD4+ Treg cells were more abundant in SCCC than ACC ( p = 0.047), as well as CD3+ LAG3+ T cell ( p = 0.029). For stroma region, ACC and SCCC had similar level of CD4+, CD8+, and PD-1 immune cell infiltration; the amount of FOXP3+ CD4 + Treg cells was also higher in SCCC than ACC, as well as CD3+ LAG3+ T cells. For the total region, FOXP3+ CD4 + Treg cells, CD3+ LAG3+ T cells, and PD-1+ T cells were enriched in SCCC compared with ACC, while CD57+ natural killer T (NKT) cells were accumulated with a marginally higher level in ACC ( p = 0.049). TCR repertoires sequencing revealed a lower Shannon’s diversity ( p = 0.029) but higher clonality ( p = 0.047) of SCCC compared with ACC. PD-L1 expression identified by mIHC in SCCC was significantly higher than ACC, in the tumor ( p 〈 0.001), stroma ( p 〈 0.001), and total regions ( p 〈 0.001). Conclusions: SCCC of ASC had higher levels of TMB, Treg cells, TCR clonality, and PD-L1, and similar level of CD3+, CD4+, and CD8+ TILs, comprehensively reflecting the intratumor heterogeneity of TIME.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2021
    detail.hit.zdb_id: 2005181-5
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  • 6
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2022
    In:  Cancer Research Vol. 82, No. 12_Supplement ( 2022-06-15), p. 5762-5762
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 82, No. 12_Supplement ( 2022-06-15), p. 5762-5762
    Abstract: Introduction: Pulmonary lymphoepithelioma-like carcinoma (PLELC) is a rare and distinct subtype of non-small cell lung cancer (NSCLC). The use of immune checkpoint inhibitors (ICIs) for advanced PLELC and tumor genomic features underlying varied treatment responses remains poorly investigated. Methods: The study involved 33 PLELC patients with clinically annotated outcomes to ICIs. Targeted sequencing covering 520 cancer related genes were performed in 22 patients to identify single nucleotide variations (SNVs), copy number variations (CNVs), tumor mutation burden (TMB) and microsatellite instability. Mutation profiles of PLELC were compared with other NSCLC subtypes including lung adenocarcinoma (LUAD) and squamous cell lung carcinoma (LUSC) as well as EBV (Epstein-Barr virus) positive nasopharyngeal carcinoma (NPC) in public databases. Associations between PLELC mutation profiles and treatment responses to ICIs were analyzed. An external dataset of ICI-treated melanoma was used in further analysis of B2M. Results: The objective response rate (ORR), disease control rate (DCR), durable clinical benefit (DCB) rate, and median PFS was 18.2%, 60.6%, 45.5%, and 4.5 months respectively. Genetic alterations were frequently identified in B2M (9 of 22, 41%), CDKN1B (7 of 22, 32%), TP53 (6 of 22, 27%), SGK1 (5 of 22, 23%), NFKBIA (4 of 22, 18%) and TNFAIP3 (4 of 22, 18%). CNVs were comprehensively presented in PLELC while SVNs were less common. In our study, 8 of 9 tumors with B2M mutations and all tumors with CDKN1B, SGK1, TNFAIP3 mutations harbored copy number amplifications. Mutation profiles of PLELC were largely different from those of LUAD and LUSC but were similar to NPC. The median TMB was 2.99 mutations/Mb. All tumors were microsatellite stable (MSS). Patients with higher TMB showed improved DCR (p=0.029), PFS (p=0.056) and overall survival (p=0.038) than those with lower TMB. Patients with lower baseline plasma EBV DNA level also had longer PFS (p & lt;0.001). The presence of B2M amplifications was significant associated with higher TMB level (p=0.022). The PFS of 7 patients with high TMB and amplified B2M were significantly longer than that of other patients (p=0.046). In the external dataset, higher expression of B2M was associated with better ICI responses for melanoma (p & lt;0.05). Pathways involving anti-tumor immune responses such as NK cell-mediated cytotoxicity, antigen processing and presentation were correlated with high B2M expression while Wnt, TGF-beta and MAPK pathways that define poor response to ICI were correlated with low B2M expression. Conclusion: Our study observed comprehensive CNVs in PLELC patients which is a unique molecular feature compared with other NSCLC subtypes and EBV-positive NPC. Higher TMB level and amplifications of B2M in PLELC patients may be used as potential biomarkers to indicate better treatment responses to ICIs. Citation Format: Li-na He, Xuanye Zhang, Xinze Lv, Yuxi Zhou, Min Li, Ting Hou, Wenjie Sun, Li Zhang, ShaoDong Hong. Genomic correlates of response to immune checkpoint blockade in Epstein-Barr virus-associated pulmonary lymphoepithelioma-like carcinoma [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 5762.
    Type of Medium: Online Resource
    ISSN: 1538-7445
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2022
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
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  • 7
    In: Cell Reports, Elsevier BV, Vol. 42, No. 9 ( 2023-09), p. 113116-
    Type of Medium: Online Resource
    ISSN: 2211-1247
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2023
    detail.hit.zdb_id: 2649101-1
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  • 8
    In: Gastrointestinal Endoscopy, Elsevier BV, ( 2023-9)
    Type of Medium: Online Resource
    ISSN: 0016-5107
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2023
    detail.hit.zdb_id: 2006253-9
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  • 9
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2021
    In:  Chinese Journal of Academic Radiology Vol. 4, No. 2 ( 2021-06), p. 125-132
    In: Chinese Journal of Academic Radiology, Springer Science and Business Media LLC, Vol. 4, No. 2 ( 2021-06), p. 125-132
    Type of Medium: Online Resource
    ISSN: 2520-8985 , 2520-8993
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 2967251-X
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  • 10
    In: Remote Sensing, MDPI AG, Vol. 15, No. 6 ( 2023-03-12), p. 1547-
    Abstract: Engineering corridors on the Qinghai–Tibet Plateau have substantially modified the regional ecosystem functions and environment, resulting in changes in the alpine ecosystem. In addition, the building and operation of these engineering corridors have led to rapid permafrost degradation, which in turn has impacted local vegetation along these corridors. This study investigated vegetation changes and their driving factors by the methods of coefficient of variation, correlation analysis, and GeoDetector in a 30 km wide buffer zone at each side along the National Highway G214 (G214) at the northern and southern flanks of the Bayan Har Mountains in part of the source area of the Yellow and Yangtze rivers on the southern Qinghai Plateau, West China. The following results were obtained: (1) The Normalized Difference Vegetation Index in Growing Season (NDVIgs) rose slightly in 2010–2019, with an average annual change rate of 0.006/a. Patterns of NDVIgs along the G214 exhibited “low at the northern flank and high at the southern flank of the Bayan Har Mountains”. (2) Spatially, average NDVIgs increased from the first buffer zone at the distance of 0–10 km from the highway centerline to the second buffer zone at 20–30 km perpendicularly away from the G214. Furthermore, the first buffer zone had the lowest coefficient of variation, possibly due to a low vegetation recovery as a result of the greatest influence of the G214 on NDVIgs at 0–10 km. (3) Furthermore, annual precipitation (AP) was the dominant factor for significantly (p 〈 0.01) and positively influencing the variations in NDVIgs (R = 0.75, p 〈 0.01). Additionally, NDVIgs was more strongly influenced by the two combined factors than any single one, with the highest q-value (0.74) for the interactive influences of AP and annual average air temperature (AAAT) and followed by that of the AP and mean annual ground temperature (MAGT) at the depth of zero annual amplitude (15 m). Evidently, the construction and operation of the G214 have directly and indirectly affected vegetation through changing environmental variables, with significant impacts on NDVIgs extended at least 20 km outwards from the highway. This study helps better understand the environmental impacts along the engineering corridors in elevational permafrost regions at mid and low latitudes and their management.
    Type of Medium: Online Resource
    ISSN: 2072-4292
    Language: English
    Publisher: MDPI AG
    Publication Date: 2023
    detail.hit.zdb_id: 2513863-7
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