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  • 1
    In: Blood, American Society of Hematology, Vol. 137, No. 22 ( 2021-06-3), p. 3064-3078
    Kurzfassung: Chronic lymphocytic leukemia (CLL) remains incurable despite B-cell receptor–targeted inhibitors revolutionizing treatment. This suggests that other signaling molecules are involved in disease escape mechanisms and resistance. Toll-like receptor 9 (TLR9) is a promising candidate that is activated by unmethylated cytosine guanine dinucleotide–DNA. Here, we show that plasma from patients with CLL contains significantly more unmethylated DNA than plasma from healthy control subjects (P & lt; .0001) and that cell-free DNA levels correlate with the prognostic markers CD38, β2-microglobulin, and lymphocyte doubling time. Furthermore, elevated cell-free DNA was associated with shorter time to first treatment (hazard ratio, 4.0; P = .003). We also show that TLR9 expression was associated with in vitro CLL cell migration (P & lt; .001), and intracellular endosomal TLR9 strongly correlated with aberrant surface expression (sTLR9; r = 0.9). In addition, lymph node–derived CLL cells exhibited increased sTLR9 (P = .016), and RNA-sequencing of paired sTLR9hi and sTLR9lo CLL cells revealed differential transcription of genes involved in TLR signaling, adhesion, motility, and inflammation in sTLR9hi cells. Mechanistically, a TLR9 agonist, ODN2006, promoted CLL cell migration (P & lt; .001) that was mediated by p65 NF-κB and STAT3 transcription factor activation. Importantly, autologous plasma induced the same effects, which were reversed by a TLR9 antagonist. Furthermore, high TLR9 expression promoted engraftment and rapid disease progression in a NOD/Shi-scid/IL-2Rγnull mouse xenograft model. Finally, we showed that dual targeting of TLR9 and Bruton’s tyrosine kinase (BTK) was strongly synergistic (median combination index, 0.2 at half maximal effective dose), which highlights the distinct role for TLR9 signaling in CLL and the potential for combined targeting of TLR9 and BTK as a more effective treatment strategy in this incurable disease.
    Materialart: Online-Ressource
    ISSN: 0006-4971 , 1528-0020
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    Sprache: Englisch
    Verlag: American Society of Hematology
    Publikationsdatum: 2021
    ZDB Id: 1468538-3
    ZDB Id: 80069-7
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  • 2
    In: Cancer Letters, Elsevier BV, Vol. 300, No. 1 ( 2011-01), p. 79-86
    Materialart: Online-Ressource
    ISSN: 0304-3835
    Sprache: Englisch
    Verlag: Elsevier BV
    Publikationsdatum: 2011
    ZDB Id: 195674-7
    ZDB Id: 2004212-7
    SSG: 12
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  • 3
    In: International Journal of Cancer, Wiley, Vol. 124, No. 1 ( 2009-01-01), p. 81-87
    Materialart: Online-Ressource
    ISSN: 0020-7136 , 1097-0215
    URL: Issue
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    Sprache: Englisch
    Verlag: Wiley
    Publikationsdatum: 2009
    ZDB Id: 218257-9
    ZDB Id: 1474822-8
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  • 4
    In: International Journal of Cancer, Wiley, Vol. 135, No. 8 ( 2014-10-15), p. 1918-1930
    Materialart: Online-Ressource
    ISSN: 0020-7136
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    Sprache: Englisch
    Verlag: Wiley
    Publikationsdatum: 2014
    ZDB Id: 218257-9
    ZDB Id: 1474822-8
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  • 5
    Online-Ressource
    Online-Ressource
    American Association for Cancer Research (AACR) ; 2006
    In:  Cancer Research Vol. 66, No. 22 ( 2006-11-15), p. 10911-10918
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 66, No. 22 ( 2006-11-15), p. 10911-10918
    Kurzfassung: Aberrant promoter methylation is frequently observed in different types of lung cancer. Epigenetic modifications are believed to occur before the clinical onset of the disease and hence hold a great promise as early detection markers. Extensive analysis of DNA methylation has been impeded by methods that are either too labor intensive to allow large-scale studies or not sufficiently quantitative to measure subtle changes in the degree of methylation. We used a novel quantitative DNA methylation analysis technology to complete a large-scale cytosine methylation profiling study involving 47 gene promoter regions in 96 lung cancer patients. Each individual contributed a lung cancer specimen and corresponding adjacent normal tissue. The study identified six genes with statistically significant differences in methylation between normal and tumor tissue (P & lt; 10−6). We explored the quantitative methylation data using an unsupervised hierarchical clustering algorithm. The data analysis revealed that methylation patterns differentiate normal from tumor tissue. For validation of our approach, we divided the samples to train a classifier and test its performance. We were able to distinguish normal from lung cancer tissue with & gt;95% sensitivity and specificity. These results show that quantitative cytosine methylation profiling can be used to identify molecular classification markers in lung cancer. (Cancer Res 2006; 66(22): 10911-8)
    Materialart: Online-Ressource
    ISSN: 0008-5472 , 1538-7445
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    Sprache: Englisch
    Verlag: American Association for Cancer Research (AACR)
    Publikationsdatum: 2006
    ZDB Id: 2036785-5
    ZDB Id: 1432-1
    ZDB Id: 410466-3
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  • 6
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 68, No. 18 ( 2008-09-15), p. 7448-7456
    Kurzfassung: Cytoglobin (CYGB) is a recently discovered vertebrate globin distantly related to myoglobin with unknown function. CYGB is assigned to chromosomal region 17q25, which is frequently lost in multiple malignancies. Previous studies failed to detect evidence for mutations in the CYGB gene. Recent studies provided preliminary evidence for increased methylation of the gene in lung cancer. Our study was aimed at investigating the role of CYGB as a tumor suppressor gene. By nested methylation-specific DNA sequencing analysis of lung and breast cancer cell lines and bronchial and mammary epithelial cell lines, we identified that methylation of a 110-bp CpG-rich segment of the CYGB promoter was correlated with gene silencing. We specifically targeted this sequence and developed a quantitative methylation-specific PCR assay, suitable for high-throughput analysis. We showed that the tumor specificity of CYGB methylation in discriminating patients with and without lung cancer, using biopsies and sputum samples. We further showed the tumor specificity of this assay with multiple other epithelial and hematologic malignancies. To show tumor suppressor activity of CYGB, we performed the following: (a) RNA interference–mediated knockdown of CYGB gene on colony formation in a CYGB expression–positive lung cancer cell line, resulting in increased colony formation; (b) enforced gene expression in CYGB expression–negative lung and breast cancer cell lines, reducing colony formation; and (c) identification of potential proximate targets down-stream of the CYGB genes. Our data constitute the first direct functional evidence for CYGB, the newest member of the globin family, as a tumor suppressor gene. [Cancer Res 2008;68(18):7448–56]
    Materialart: Online-Ressource
    ISSN: 0008-5472 , 1538-7445
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    Sprache: Englisch
    Verlag: American Association for Cancer Research (AACR)
    Publikationsdatum: 2008
    ZDB Id: 2036785-5
    ZDB Id: 1432-1
    ZDB Id: 410466-3
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  • 7
    Online-Ressource
    Online-Ressource
    American Association for Cancer Research (AACR) ; 2008
    In:  Cancer Epidemiology, Biomarkers & Prevention Vol. 17, No. 8 ( 2008-08-01), p. 2174-2179
    In: Cancer Epidemiology, Biomarkers & Prevention, American Association for Cancer Research (AACR), Vol. 17, No. 8 ( 2008-08-01), p. 2174-2179
    Kurzfassung: Management of the patient with oral epithelial dysplasia depends on the ability to predict malignant transformation. Histologic grading of this condition fails in this regard and is also subject to interpathologist and intrapathologist variability. This study uses longitudinal clinical samples to explore the prognostic value of a previously validated panel of methylation biomarkers in a cohort of patients with histologically proven oral dysplasia. Methylation enrichment pyrosequencing assays were used to provide the sensitivity of traditional methylation-specific PCR with the additional specificity advantages of a subsequent confirmatory sequencing reaction. In 57% (8 of 14) patients with a lesion that transformed to oral squamous cell carcinoma, 26% (26 of 100) of longitudinal samples collected over ≥3 years showed p16 methylation. Only 1% (2 of 184) of samples from 8% of patients (2 of 24) not undergoing malignant transformation within 3 years had p16 methylation. Both of these samples with p16 promoter methylation were the most recently collected and the patients remain under continuing clinical review. Promoter methylation of MGMT, CYGB, and CCNA1 did not correlate with malignant progression. We thus conclude that methylation of the p16 gene promoter shows promise as a predictor for malignant transformation (Fisher's exact, P = 0.002) in a subset of patients. (Cancer Epidemiol Biomarkers Prev 2008;17(8):2174–9)
    Materialart: Online-Ressource
    ISSN: 1055-9965 , 1538-7755
    Sprache: Englisch
    Verlag: American Association for Cancer Research (AACR)
    Publikationsdatum: 2008
    ZDB Id: 2036781-8
    ZDB Id: 1153420-5
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  • 8
    Online-Ressource
    Online-Ressource
    American Association for Cancer Research (AACR) ; 2015
    In:  Cancer Research Vol. 75, No. 1_Supplement ( 2015-01-01), p. B20-B20
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 75, No. 1_Supplement ( 2015-01-01), p. B20-B20
    Kurzfassung: Cancer associated myofibroblasts (CAMs) originating from either tissue-resident fibroblast precursors or from bone marrow derived mesenchymal stromal cells, contribute to the tumor microenvironment by the secretion of growth factors, cytokines, proteases and ECM proteins. Exaggerated CAM reactions have been associated with adverse outcomes in various cancers. The role of altered DNA CpG-island methylation in promoting tumorigenesis has been widely studied in cancer cells; altered DNA methylation in cancer stromal cells including CAMs has also been described but its biological significance remains uncertain. Our present objective was to determine the significance of DNA methylation in influencing the properties of esophageal CAMs. In initial studies we demonstrated different DNA methylation patterns in seven low passage primary myofibroblast lines from esophageal adenocarcinomas (n=3) and squamous cell carcinoma (n=4) patients in comparison to matched myofibroblasts derived from adjacent, macroscopically tumor-free, tissue (ATMs). Further, we found changes in global DNA methylation assessed in LINE1 elements by pyrosequencing analysis between CAMs and matched ATMs. Cluster analysis of the myofibroblast methylome determined by Illumina 450k human DNA methylation array revealed distinct methylation patterns in CAMs and ATMs. In order to generate a model for studying the biological consequences of epigenetic modification of myofibroblasts we treated cultured primary low passage normal esophageal tissue myofibroblasts (NTMs) with the DNA methyl transferase inhibitor, 5'Aza-2'deoxycytidin (DAC). A three-day exposure of NTMs to 0.1μM DAC induced a transient 10% decrease of global DNA methylation assessed by LINE1 element analysis; DAC (0.1 μM) also decreased myofibroblast proliferation by 20 %, and this persisted up to 28 days after treatment, and it stably increased migration in transwell migration assays by 50%. In a nude mouse xenograft model using esophageal squamous carcinoma cells (OE21) inclusion of CAMs stimulated tumor growth more than the inclusion of ATMs; moreover, myofibroblasts pretreated with DAC increased tumor growth compared with xenografts of OE21cells and untreated myofibroblasts. Our data indicate (a) modification of DNA methylation in esophageal cancer myofibroblasts, and (b) that DNA demethylation induced by DAC stimulates migration of CAMs as well as their capacity to promote xenograft growth in vivo. Understanding the mechanisms and consequences of epigenetic changes in esophageal stromal cells may be useful in developing future anticancer strategies. Citation Format: Olivier T. Giger, Benjamin Brown, Triantafillos Liloglou, Puthen V. Jithesh, J Graham Dockray, Andrea Varro. Global hypomethylation of esophageal myofibroblasts is associated with accelerated tumor growth.. [abstract]. In: Abstracts: AACR Special Conference on Cellular Heterogeneity in the Tumor Microenvironment; 2014 Feb 26-Mar 1; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2015;75(1 Suppl):Abstract nr B20. doi:10.1158/1538-7445.CHTME14-B20
    Materialart: Online-Ressource
    ISSN: 0008-5472 , 1538-7445
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    Sprache: Englisch
    Verlag: American Association for Cancer Research (AACR)
    Publikationsdatum: 2015
    ZDB Id: 2036785-5
    ZDB Id: 1432-1
    ZDB Id: 410466-3
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  • 9
    Online-Ressource
    Online-Ressource
    American Association for Cancer Research (AACR) ; 2012
    In:  Cancer Research Vol. 72, No. 8_Supplement ( 2012-04-15), p. 4133-4133
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 72, No. 8_Supplement ( 2012-04-15), p. 4133-4133
    Kurzfassung: Introduction: Early detection of lung cancer by screening of high risk populations (identified by epidemiological and life-style factors) has the potential to save many lives. However, effective screening is reliant on minimally invasive techniques, such as CT screening, bronchioalveolar lavage (BAL) and blood tests, and the identification of suitable biomarkers. CT screening is effective in reducing mortality, but generates a large proportion of indeterminate nodules that must be further characterised. MicroRNAs (miRNA) have great potential as biomarkers due to their tissue-specific and cancer-specific expression patterns. We have identified tumour-specific miRNAs for non-small cell lung cancer (NSCLC), using a combination of screening on TaqMan microRNA TLDA cards and validation with qRTPCR assays, with the aim of utilising these as biomarkers in the early detection setting. Methods: Our sample group consisted of 31 frozen samples from 20 Liverpool Lung Project (LLP) NSCLC patients, including 10 adenocarcinomas (Ad), 10 squamous cell carcinomas (SCC) & matched normal tissue. Two further validation sets consisted of equal numbers of Ad and SCC tumour/normal pairs (124 in total). MiRNA was prepared from tumour and normal specimens using Qiagen MicroRNeasy kits. Reverse transcription and pre-amplification was performed using Applied Biosystems MegaPlex Pools and miRNAs were quantified on a 7900HT Real-Time PCR System with TaqMan Array Human MiRNA Card Set v3.0 (covering 754 human miRNAs). Ct values were exported using SDS v2.3 data and RQ Manager software and further analysed in Bioconductor. Validation qRTPCR was performed with individual miRNA assays, following reverse transcription with MegaPlex pools. Results: When Benjamin-Hoechst-adjusted-p value & lt;0.05 was used as a cut-off, of the 754 miRNA targets, 68 miRNAs were upregulated and 8 were downregulated with & gt;4.0 fold-change in the cancer group. A subset of 22 miRNAs including miR-34a, miR-96, let-7g and miR-183 was identified with the greatest expression in tumours. Differential expression of all 22 miRNAs was confirmed in an independent set of 24 tumour/normal pairs. Using these 22 validated miRNAs we performed discriminative modelling and identified a model based on just 8 markers that gave a specificity of 100% and a sensitivity of 98%. This panel was validated, with 97% specificity and 91% sensitivity, in a 2nd independent sample set containing 48 tumours and paired normal samples. Conclusion: A number of miRNAs was identified that showed good discriminatory power individually, but greatest sensitivity and specificity when combined as an 8 member panel. The lung cancer specific miRNAs we have identified provide a potential source of early detection biomarkers. Their applicability to minimally-invasive samples is being evaluated in a range of samples including plasma and bronchial lavage. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 4133. doi:1538-7445.AM2012-4133
    Materialart: Online-Ressource
    ISSN: 0008-5472 , 1538-7445
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    Sprache: Englisch
    Verlag: American Association for Cancer Research (AACR)
    Publikationsdatum: 2012
    ZDB Id: 2036785-5
    ZDB Id: 1432-1
    ZDB Id: 410466-3
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  • 10
    Online-Ressource
    Online-Ressource
    American Association for Cancer Research (AACR) ; 2011
    In:  Cancer Research Vol. 71, No. 8_Supplement ( 2011-04-15), p. 4158-4158
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 71, No. 8_Supplement ( 2011-04-15), p. 4158-4158
    Kurzfassung: Analysis of DNA methylation at the SHOX2 locus has been shown to identify lung cancer in bronchial aspirates of patients with disease, and can potentially provide more definitive information to clinicians when histologic and cytologic findings from bronchoscopy are ambiguous. In a previous training study on bronchial aspirate samples, valid measurements were obtained from a total of 523 patient samples (242 controls, 281 cases). DNA methylation of SHOX2 discriminated malignant from benign lung disease (e.g. abscesses, infections, obstructive lung diseases, sarcoidosis, scleroderma, stenoses) with 68% sensitivity and 95% specificity. A SHOX2 assay performance was then validated in a blinded and randomized case control study comprised of Saccomanno-fixed bronchial lavage samples from 250 patients (125 cases, 125 controls). Results showed the SHOX2 assay reliably identified patients with lung cancer (AUC = 0.95, sensitivity 78%, specificity 96%). Computed tomography (CT) is currently being evaluated as a screening tool for early detection of lung cancer in several large ongoing trials. The randomized National Lung Screening Trial (NLST) in the United States was halted early after 8-year results showed that screening heavy smokers with low-dose helical CT significantly reduced deaths from lung cancer when compared with chest x-ray screening. However, CT scans fail to detect pre-invasive lesions and early lung cancer in the central airways, specifically small cell lung cancer (SCLC) and early stages of squamous cell carcinoma, which comprise 17-29% of all lung cancers. The use of a biomarker assay in conjunction with a CT might help to identify these patients. This study aimed to develop a modified SHOX2 assay which detects circulating methylated SHOX2 in blood and to analyze the performance of this optimized SHOX2 assay in plasma. Quantitative real-time PCR was used to analyze DNA methylation of SHOX2 assay in plasma samples from a total of 371 individuals (lung cancer patients, healthy individuals, benign lung diseases and prostate cancer patients). Performance of the assay was calculated to determine sensitivity and specificity based on a clinical cut-off. Valid measurements were obtained from a total of 343 patient samples (155 controls, 188 cases). DNA methylation of SHOX2 discriminated malignant lung disease from controls at a sensitivity of 62% and a specificity of 90%. SCLC (80%) and squamous cell carcinoma (63%) were detected at higher sensitivity as compared to adenocarcinoma (42%). SHOX2 DNA methylation is a sensitive and specific biomarker for detecting the presence of malignant lung disease in blood plasma, with highest sensitivity for detection of small cell and squamous cell lung cancer. A blood-based test for detection of SHOX2 DNA methylation could be a useful tool to identify patients with lung cancer alone or in conjunction with CT. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 102nd Annual Meeting of the American Association for Cancer Research; 2011 Apr 2-6; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2011;71(8 Suppl):Abstract nr 4158. doi:10.1158/1538-7445.AM2011-4158
    Materialart: Online-Ressource
    ISSN: 0008-5472 , 1538-7445
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    Sprache: Englisch
    Verlag: American Association for Cancer Research (AACR)
    Publikationsdatum: 2011
    ZDB Id: 2036785-5
    ZDB Id: 1432-1
    ZDB Id: 410466-3
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