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Supplementary material 1 from: Singh G, Aptroot A, Rico VJ, Otte J, Divakar PK, Crespo A, Cáceres ME da S, Lumbsch HT, Schmitt I (2018) Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters. MycoKeys 44: 19-50. https://doi.org/10.3897/mycokeys.44.29904

Singh, Garima ; Aptroot, André ; Rico, Víctor J. ; [et al.]

Pensoft Publishers ; 2018

In: MycoKeys Vol. 44 ( 2018-12-14), p. 19-50

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In: MycoKeys, Pensoft Publishers, Vol. 44 ( 2018-12-14), p. 19-50

Abstract: Multilocus phylogenetic studies revealed a high level of cryptic diversity within the lichen-forming fungal genus Maronina (Protoparmelioideae, Parmeliaceae). Coalescent-based species delimitation suggested that most of the cryptic molecular lineages warranted recognition as separate species. Here we study the morphology and chemistry of these taxa and formally describe eight new species based on phenotypical and molecular characters. Further, we evaluate the use of ITS rDNA as a DNA barcode for identifying species in this genus. For the first time, we obtained an ITS sequence of Maroninaaustraliensis , the type species of the genus and showed that it is phylogenetically not closely related to species currently placed in Maronina or Protoparmelia . We assembled a dataset of 66 ITS sequences to assess the interspecies genetic distances amongst the twelve Maronina species using ITS as DNA barcode. We found that Maronina and Protoparmelia form a supported monophyletic group whereas M.australiensis is sister to both. We therefore propose a new genus Neoprotoparmelia to accommodate the tropical-subtropical species within Protoparmelioideae, with Neoprotoparmeliacorallifera as the type, N.amerisidiata , N.australisidiata , N.brasilisidiata , N.capensis , N.crassa , N.pauli , N.plurisporibadia and N.siamisidiata as new species and N.capitata , N.isidiata , N.multifera , N.orientalis and N.pulchra as new proposed combinations. We provide a key to Neoprotoparmelia and confirm the use of ITS for accurately identifying species in this group.

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.44.29904

DOI: 10.3897/mycokeys.44.29904.figure1

DOI: 10.3897/mycokeys.44.29904.figure10

DOI: 10.3897/mycokeys.44.29904.figure11

DOI: 10.3897/mycokeys.44.29904.figure12

DOI: 10.3897/mycokeys.44.29904.figure13

DOI: 10.3897/mycokeys.44.29904.figure2

DOI: 10.3897/mycokeys.44.29904.figure3

DOI: 10.3897/mycokeys.44.29904.figure4

DOI: 10.3897/mycokeys.44.29904.figure5

DOI: 10.3897/mycokeys.44.29904.figure6

DOI: 10.3897/mycokeys.44.29904.figure7

DOI: 10.3897/mycokeys.44.29904.figure8

DOI: 10.3897/mycokeys.44.29904.figure9

DOI: 10.3897/mycokeys.44.29904.suppl1

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2018

detail.hit.zdb_id: 2630648-7

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Figure 9 from: Tiwutanon P, Chaiyasut K, Lumbsch HT, Kraichak E (2023) Resurrection of Leucobryum scalare Müll.Hal. ex M.Fleisch. (Bryophyta, Leucobryaceae) based on phylogenetic and morphometric evidence. PhytoKeys 222: 27-47. https://doi.org/10.3897/phytokeys.222.98990

Tiwutanon, Patsakorn ; Chaiyasut, Kasidis ; Lumbsch, H. Thorsten ; [et al.]

Pensoft Publishers ; 2023

In: PhytoKeys Vol. 222 ( 2023-03-20), p. 27-47

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In: PhytoKeys, Pensoft Publishers, Vol. 222 ( 2023-03-20), p. 27-47

Abstract: Leucobryum scalare was described in 1904 but its taxonomic status has been disputed, being reduced to a variety of Leucobryum aduncum or synonymized with Leucobryum aduncum . The taxonomic confusion of this taxon has remained unresolved. Hence, we revisited the taxonomic status of the taxon using phylogenetic and morphometric approaches. A total of 27 samples from Leucobryum aduncum var. aduncum and Leucobryum aduncum var. scalare were used to generate data from four markers, including ITS1, ITS2, atpB - rbcL spacer, and trnL - trnF . The concatenated dataset was used to reconstruct a phylogenetic tree. Both qualitative and quantitative morphological characters were measured and analyzed with Principal Component Analysis (PCA) and PERMANOVA. The results showed that the two taxa are closely related but they are reciprocally monophyletic. Both qualitative and quantitative characters could also separate Leucobryum aduncum var. scalare from Leucobryum aduncum var. aduncum as shown with PCA and PERMANOVA. We propose the resurrection of the species rank for Leucobryum scalare as separate from Leucobryum aduncum . This work highlights the need for a more thorough revision of Leucobryum to clarify the actual level of diversity in this genus.

Type of Medium: Online Resource

ISSN: 1314-2003 , 1314-2011

URL: Article

DOI: 10.3897/phytokeys.222.98990

DOI: 10.3897/phytokeys.222.98990.figure1

DOI: 10.3897/phytokeys.222.98990.figure2

DOI: 10.3897/phytokeys.222.98990.figure3

DOI: 10.3897/phytokeys.222.98990.figure4

DOI: 10.3897/phytokeys.222.98990.figure5

DOI: 10.3897/phytokeys.222.98990.figure6

DOI: 10.3897/phytokeys.222.98990.figure7

DOI: 10.3897/phytokeys.222.98990.figure8

DOI: 10.3897/phytokeys.222.98990.figure9

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2023

detail.hit.zdb_id: 2579891-1

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Supplementary material 3 from: Grewe F, Lagostina E, Wu H, Printzen C, Lumbsch HT (2018) Population genomic analyses of RAD sequences resolves the phylogenetic relationship of the lichen-forming fungal species Usnea antarctica and Usnea aurantiacoatra. MycoKeys 43: 91-113. https://doi.org/10.3897/mycokeys.43.29093

Grewe, Felix ; Lagostina, Elisa ; Wu, Huini ; [et al.]

Pensoft Publishers ; 2018

In: MycoKeys Vol. 43 ( 2018-12-12), p. 91-113

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In: MycoKeys, Pensoft Publishers, Vol. 43 ( 2018-12-12), p. 91-113

Abstract: Neuropogonoid species in the lichen-forming fungal genus Usnea exhibit great morphological variation that can be misleading for delimitation of species. We specifically focused on the species delimitation of two closely-related, predominantly Antarctic species differing in the reproductive mode and representing a so-called species pair: the asexual U.antarctica and the sexual U.aurantiacoatra . Previous studies have revealed contradicting results. While multi-locus studies based on DNA sequence data provided evidence that these two taxa might be conspecific, microsatellite data suggested they represent distinct lineages. By using RADseq, we generated thousands of homologous markers to build a robust phylogeny of the two species. Furthermore, we successfully implemented these data in fine-scale population genomic analyses such as DAPC and fineRADstructure. Both Usnea species are readily delimited in phylogenetic inferences and, therefore, the hypothesis that both species are conspecific was rejected. Population genomic analyses also strongly confirmed separated genomes and, additionally, showed different levels of co-ancestry and substructure within each species. Lower co-ancestry in the asexual U.antarctica than in the sexual U.aurantiacoatra may be derived from a wider distributional range of the former species. Our results demonstrate the utility of this RADseq method in tracing population dynamics of lichens in future analyses.

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.43.29093

DOI: 10.3897/mycokeys.43.29093.figure1

DOI: 10.3897/mycokeys.43.29093.figure2

DOI: 10.3897/mycokeys.43.29093.figure3

DOI: 10.3897/mycokeys.43.29093.figure4

DOI: 10.3897/mycokeys.43.29093.suppl1

DOI: 10.3897/mycokeys.43.29093.suppl2

DOI: 10.3897/mycokeys.43.29093.suppl3

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2018

detail.hit.zdb_id: 2630648-7

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Figure 4 from: Khan M, Khalid AN, Lumbsch HT (2018) A new species of Lecidea (Lecanorales, Ascomycota) from Pakistan. MycoKeys 38: 25-34. https://doi.org/10.3897/mycokeys.38.26960

Khan, Memoona ; Khalid, Abdul Nasir ; Lumbsch, H. Thorsten

Pensoft Publishers ; 2018

In: MycoKeys Vol. 38 ( 2018-08-07), p. 25-34

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In: MycoKeys, Pensoft Publishers, Vol. 38 ( 2018-08-07), p. 25-34

Abstract: We describe here a new species, Lecideaaptrootii , in Lecidea sensu stricto from Swat Valley, Pakistan. It is most similar to L.fuscoatra in having an areolate thallus and black, lecideine apothecia with a persistent margin. However, L.aptrootii can be readily distinguished by having smaller ascospores (average length 8-10 µm). In phylogenetic analyses, using ITS and nuLSU rDNA sequences, L.aptrootii forms a sister-group relationship to L.grisella , which differs in having a rimose thallus.

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.38.26960

DOI: 10.3897/mycokeys.38.26960.figure1

DOI: 10.3897/mycokeys.38.26960.figure2

DOI: 10.3897/mycokeys.38.26960.figure3

DOI: 10.3897/mycokeys.38.26960.figure4

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2018

detail.hit.zdb_id: 2630648-7

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Figure 2 from: Phraphuchamnong P, Nelsen MP, Distefano I, Mercado-Diaz JA, Parnmen S, Rangsiruji A, Buaruang K, Lücking R, Lumbsch HT (2022) A new species of Megalaria (Ramalinaceae, Ascomycota) from Thailand, and recognition of subgenus Catillochroma. MycoKeys 93: 149-163. https://doi.org/10.3897/mycokeys.93.90962

Phraphuchamnong, Phimpisa ; Nelsen, Matthew P. ; Distefano, Isabel ; [et al.]

Pensoft Publishers ; 2022

In: MycoKeys Vol. 93 ( 2022-11-04), p. 149-163

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In: MycoKeys, Pensoft Publishers, Vol. 93 ( 2022-11-04), p. 149-163

Abstract: Tropical regions harbor a substantial diversity of lichenized fungi, but face numerous threats to their persistence, often even before previously unknown species have been described and their evolutionary relationships have been elucidated. Megalaria (Ramalinaceae) is a lichen-forming genus of fungi that produces crustose thalli, and includes a number of lineages occupying tropical rain forests; however, taxonomic and phylogenetic work on this clade is limited. Here we leverage both morphological and sequence data to describe a new species from the tropics, M. pachaylenophila . This taxon forms a crustose thallus, lacks secondary metabolites, and occurs in mangrove forests of Thailand. We supplemented molecular data from this species with data from other species, including two genera related to and occasionally included in Megalaria , namely Catillochroma and Lopezaria . Our analyses revealed Catillochroma species form a monophyletic group embedded within Megalaria , and we therefore recognize this clade at the subgeneric level. Since we only included the type species of Lopezaria in this study, we refrain from proposing a taxonomic conclusion for that clade at the moment. Several taxonomic combinations are made to reflect phylogenetic evidence supporting the inclusion of these species in Megalaria .

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.93.90962

DOI: 10.3897/mycokeys.93.90962.figure1

DOI: 10.3897/mycokeys.93.90962.figure2

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2022

detail.hit.zdb_id: 2630648-7

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Figure 2 from: Luangsuphabool T, Lumbsch HT, Piapukiew J, Sangvichien E (2018) Architrypethelium murisporum (Ascomycota, Trypetheliaceae), a remarkable new lichen species from Thailand challenging ascospore septation as an indicator of phylogenetic relationships. MycoKeys 34: 25-34. https://doi.org/10.3897/mycokeys.34.23836

Luangsuphabool, Theerapat ; Lumbsch, H. Thorsten ; Piapukiew, Jittra ; [et al.]

Pensoft Publishers ; 2018

In: MycoKeys Vol. 34 ( 2018-05-10), p. 25-34

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In: MycoKeys, Pensoft Publishers, Vol. 34 ( 2018-05-10), p. 25-34

Abstract: Architrypetheliummurisporum Luangsuphabool, Lumbsch & amp; Sangvichien is described for a crustose lichen occurring in dry evergreen forest in Thailand. It is characterised by a green to yellow-green corticated thallus, perithecia fused in black pseudostromata with white rim surrounding the ostiole and small, hyaline and muriform ascospores. Currently, all species in the genus Architrypethelium have transversely septate ascospores, hence the discovery of this new species indicates that ascospore septation is variable within the genus, similar to numerous other groups of lichen-forming ascomycetes. Phylogenetic analyses of two loci (mtSSU and nuLSU) supported the position of the new species within Architrypethelium . This is the first report of the genus in Southeast Asia.

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.25.23836

DOI: 10.3897/mycokeys.34.23836.figure1

DOI: 10.3897/mycokeys.34.23836.figure2

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2018

detail.hit.zdb_id: 2630648-7

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Figure 2 from: Barcenas-Peña A, Leavitt SD, Huang J-P, Grewe F, Lumbsch HT (2018) Phylogenetic study and taxonomic revision of the Xanthoparmelia mexicana group, including the description of a new species (Parmeliaceae, Ascomycota). MycoKeys 40: 13-28. https://doi.org/10.3897/mycokeys.40.26724

Barcenas-Peña, Alejandrina ; Leavitt, Steven D. ; Huang, Jen-Pan ; [et al.]

Pensoft Publishers ; 2018

In: MycoKeys Vol. 40 ( 2018-09-18), p. 13-28

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In: MycoKeys, Pensoft Publishers, Vol. 40 ( 2018-09-18), p. 13-28

Abstract: Xanthoparmelia (Parmeliaceae, Ascomycota) is the most species-rich genus of lichen-forming fungi. Species boundaries are based on morphological and chemical features, varying reproductive strategies and, more recently, molecular sequence data. The isidiate Xanthoparmeliamexicana group is common in arid regions of North and Central America and includes a range of morphological variation and variable secondary metabolites – salazinic or stictic acids mainly. In order to better understand the evolutionary history of this group and potential taxonomic implications, a molecular phylogeny representing 58 ingroup samples was reconstructed using four loci, including ITS, mtSSU, nuLSU rDNA and MCM7. Results indicate the existence of multiple, distinct lineages phenotypically agreeing with X.mexicana. One of these isidiate, salazinic acid-containing lineages is described here as a new species, X.pedregalensis sp. nov., including populations from xerophytic scrub vegetation in Pedregal de San Angel, Mexico City. X.mexicana s. str. is less isidiate than X.pedregalensis and has salazinic and consalazinic acid, occasionally with norstictic acid; whereas X.pedregalensis contains salazinic and norstictic acids and an unknown substance. Samples from the Old World, morphologically agreeing with X.mexicana , are only distantly related to X.mexicana s. str. Our results indicate that X.mexicana is likely less common than previously assumed and ongoing taxonomic revisions are required for isidiate Xanthoparmelia species.

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.40.26724

DOI: 10.3897/mycokeys.40.26724.figure1

DOI: 10.3897/mycokeys.40.26724.figure2

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2018

detail.hit.zdb_id: 2630648-7

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Luangsuphabool, Theerapat ; Lumbsch, H. Thorsten ; Piapukiew, Jittra ; [et al.]

Pensoft Publishers ; 2018

In: MycoKeys Vol. 34 ( 2018-05-10), p. 25-34

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In: MycoKeys, Pensoft Publishers, Vol. 34 ( 2018-05-10), p. 25-34

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.34.23836

DOI: 10.3897/mycokeys.34.23836.figure1

DOI: 10.3897/mycokeys.34.23836.figure2

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2018

detail.hit.zdb_id: 2630648-7

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Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa

Ariyawansa, Hiran A. ; Hyde, Kevin D. ; Jayasiri, Subashini C. ; [et al.]

Springer Science and Business Media LLC ; 2015

In: Fungal Diversity Vol. 75, No. 1 ( 2015-11), p. 27-274

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In: Fungal Diversity, Springer Science and Business Media LLC, Vol. 75, No. 1 ( 2015-11), p. 27-274

Type of Medium: Online Resource

ISSN: 1560-2745 , 1878-9129

URL: Article

DOI: 10.1007/s13225-015-0346-5

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2015

detail.hit.zdb_id: 2424484-3

SSG: 12

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The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts

Jayasiri, Subashini C. ; Hyde, Kevin D. ; Ariyawansa, Hiran A. ; [et al.]

Springer Science and Business Media LLC ; 2015

In: Fungal Diversity Vol. 74, No. 1 ( 2015-9), p. 3-18

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In: Fungal Diversity, Springer Science and Business Media LLC, Vol. 74, No. 1 ( 2015-9), p. 3-18

Type of Medium: Online Resource

ISSN: 1560-2745 , 1878-9129

URL: Article

DOI: 10.1007/s13225-015-0351-8

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2015

detail.hit.zdb_id: 2424484-3

SSG: 12

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