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  • 1
    In: OncoImmunology, Informa UK Limited, Vol. 1, No. 2 ( 2012-03), p. 129-140
    Type of Medium: Online Resource
    ISSN: 2162-402X
    Language: English
    Publisher: Informa UK Limited
    Publication Date: 2012
    detail.hit.zdb_id: 2645309-5
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  • 2
    In: Blood, American Society of Hematology, Vol. 110, No. 8 ( 2007-10-15), p. 2931-2939
    Abstract: Cell-based immunotherapy in settings of allogeneic stem cell transplantation or donor leukocyte infusion has curative potential, especially in hematologic malignancies. However, this approach is severely restricted due to graft-versus-host disease (GvHD). This limitation may be overcome if target antigens are molecularly defined and effector cells are specifically selected. We chose formin-related protein in leukocytes 1 (FMNL1) as a target antigen after intensive investigation of its expression profile at the mRNA and protein levels. Here, we confirm restricted expression in peripheral blood mononuclear cells (PBMCs) from healthy donors but also observe overexpression in different leukemias and aberrant expression in transformed cell lines derived from solid tumors. We isolated allorestricted T-cell clones expressing a single defined TCR recognizing a particular HLA-A2–presented peptide derived from FMNL1. This T-cell clone showed potent antitumor activity against lymphoma and renal cell carcinoma cell lines, Epstein-Barr virus (EBV)–transformed B cells, and primary tumor samples derived from patients with chronic lymphocytic leukemia (CLL), whereas nontransformed cells with the exception of activated B cells were only marginally recognized. Allorestricted TCRs with specificity for naturally presented FMNL1-derived epitopes may represent promising reagents for the development of adoptive therapies in lymphoma and other malignant diseases.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2007
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 3
    In: Blood, American Society of Hematology, Vol. 114, No. 10 ( 2009-09-03), p. 2131-2139
    Abstract: Adoptive transfer of T cells expressing transgenic T-cell receptors (TCRs) with antitumor function is a hopeful new therapy for patients with advanced tumors; however, there is a critical bottleneck in identifying high-affinity TCR specificities needed to treat different malignancies. We have developed a strategy using autologous dendritic cells cotransfected with RNA encoding an allogeneic major histocompatibility complex molecule and a tumor-associated antigen to obtain allo-restricted peptide-specific T cells having superior capacity to recognize tumor cells and higher functional avidity. This approach provides maximum flexibility because any major histocompatibility complex molecule and any tumor-associated antigen can be combined in the dendritic cells used for priming of autologous T cells. TCRs of allo-restricted T cells, when expressed as transgenes in activated peripheral blood lymphocytes, transferred superior function compared with self-restricted TCR. This approach allows high-avidity T cells and TCR specific for tumor-associated self-peptides to be easily obtained for direct adoptive T-cell therapy or for isolation of therapeutic transgenic TCR sequences.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2009
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 4
    In: Journal for ImmunoTherapy of Cancer, BMJ, Vol. 9, No. Suppl 2 ( 2021-11), p. A201-A201
    Abstract: Transgenic T cell receptor (TCR)-based T cell therapies are a powerful treatment for cancer. However, one of the greatest remaining challenges is the successful identification of tumor-specific antigens (TSAs) that are shared between patients and tumor entities and elicit strong T cell responses. The non-coding region of the genome has become a promising source of such novel TSAs. Previously, we have identified ten immunogenic shared TSAs, derived from the translation in canonical and non-canonical reading frames of non-mutated non-coding genomic regions like introns, intergenic regions and 5’-untranslated regions. In the following process, we identified several TCRs specific for these TSAs. Here we aimed at the validation of two TSA-specific TCRs in a model of ovarian cancer-derived organoids. Methods Freshly collected ovarian tumor and normal ovarian tissue expressing the HLA of interest were mechanically disrupted, enzymatically digested and cryopreserved. Expression of the TSA of interest in the primary tumor tissue was confirmed with RNA sequencing and mass spectrometry. Thawed single cell suspensions were used to generate tumor organoids and 2D-growing normal ovarian cell lines. To validate the generated cell lines, the presence or absence of two previously identified tumor-specific mutations was investigated by targeted Sanger sequencing in the genome of the tumor organoids, normal cell lines and primary tissues. Two TSA-specific TCRs were retrovirally transduced into CD8+ T cells of three healthy donors. Expanded TSA-specific CD8+T cells were co-cultured 24 hours with single cell suspensions of IFN-γ pre-stimulated, tumor organoids or the 2D-growing normal ovarian cell line. IFN-γ ELISA was used to assess activation of TSA-specific T cells upon co-culture. Results The TSA of interest was detected both at the transcriptomic and proteomic level in the primary ovarian tumor tissue. Using frozen single cell suspensions of this tumor and corresponding normal tissue, tumor organoids and 2D-growing normal cell lines were successfully established and their integrity was confirmed. Both TSA-specific TCRs were efficiently expressed on CD8+ T cells from three donors. TCR-transgenic T cells showed activation upon co-culture with tumor organoids without recognition of normal ovarian cell lines. Normal cells were only recognized after loading with the specific target peptide. Conclusions In conclusion, the high relevance of two TCRs identified to be specific for a novel shared tumor-specific antigen was confirmed in a model of ovarian cancer organoids. The findings support further development of these TCRs for cancer immunotherapy and implementation of tumor organoids as a relevant tool for the characterization of TSA-specific TCRs. Ethics Approval ‘The tumor and normal tissue samples were purchased at a Biobank, collected in compliance with all applicable EU regulations and were pseudonymized.’
    Type of Medium: Online Resource
    ISSN: 2051-1426
    Language: English
    Publisher: BMJ
    Publication Date: 2021
    detail.hit.zdb_id: 2719863-7
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  • 5
    Online Resource
    Online Resource
    BMJ ; 2013
    In:  Journal for ImmunoTherapy of Cancer Vol. 1, No. S1 ( 2013-11)
    In: Journal for ImmunoTherapy of Cancer, BMJ, Vol. 1, No. S1 ( 2013-11)
    Type of Medium: Online Resource
    ISSN: 2051-1426
    Language: English
    Publisher: BMJ
    Publication Date: 2013
    detail.hit.zdb_id: 2719863-7
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  • 6
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2016
    In:  Cancer Immunology Research Vol. 4, No. 11_Supplement ( 2016-11-01), p. A017-A017
    In: Cancer Immunology Research, American Association for Cancer Research (AACR), Vol. 4, No. 11_Supplement ( 2016-11-01), p. A017-A017
    Abstract: Recent advances in cellular immunotherapy show that cancer cells can be efficiently eliminated by adoptive transfer of modified patient T cells. The main effector functions can be provided by genetically engineered lymphocytes expressing T cell receptors (TCR) isolated from tumor antigen-specific cytotoxic CD8+ lymphocytes, which recognize tumor-associated antigens presented on HLA class I molecules. Nevertheless, for efficient and sustained cytotoxic and memory CD8+ T cell responses, T cell help delivered by CD4+ T lymphocytes plays a critical role. Multifunctional CD4+ T cells are essential to activate, control and maintain immune responses. CD4+ T cells recognize antigen-derived peptides presented by HLA class II molecules, thereby HLA class II tumor antigen-positive cells may also be efficiently eliminated by direct CD4+ cytotoxic mechanisms. Recently it has been shown that adoptive transfer of tumor antigen-specific CD4+ T cells alone can lead to substantial regression of epithelial tumors (Science. 2014 May 9;344(6184):641-5). To appropriately employ CD4+ T cells in tumor defense, detailed molecular knowledge regarding the antigens and corresponding epitopes they recognize is essential. We recently expanded our TCR platform by introducing a fast and efficient method for direct identification of antigens and respective epitopes recognized by CD4+ T cells. During method development, elucidated viral antigens allowed rapid clinical application, and the methodology was also applied for rapid identification of epitopes of CD4+ T cell clones recognizing multiple cancer-testis antigens (CT). For this, PBL from a healthy donor were stimulated with a mixture of autologous APCs transfected with in vitro transcribed RNA encoding various CT antigens fused to targeting signals for directed HLA class II cross-presentation. Antigen-reactive CD4+ T cells were isolated and expanded. In order to identify the antigen and epitope specificity of each T cell clone, DNA sequences of each CT antigen were randomly digested and DNA fragments introduced in a vector mixture that allows expression of the fragments in all possible reading frames fused to a bacterial selection marker. These vectors were then expressed in XL1 blue bacteria and fed as pools to autologous APCs. Thereby the APCs phagocytosed and directly presented random CT epitopes on their HLA class II molecules. Subsequently, these pool-loaded APCs were tested with CT-antigen-specific CD4+ T cell clones. In a second step, the single bacterial colonies of a positive pool were re-tested individually and the antigen fragments recognized were identified by DNA sequencing, and confirmed by testing of synthetic peptides. HLA restriction was determined by testing responses against antigen-positive HLA allogenic cells. Using this approach, TCR sequences, epitope sequences and respective MHC-restriction elements were identified for multiple antigens in a single round procedure. This method has broad application for identification of: 1) antigens and epitopes recognized by CD4 tumor infiltrating lymphocytes, 2) immune relevant patient-specific mutations recognized by CD4+ T cells, 3) defined epitopes recognized by T helper cells for generation of tumor vaccines, 4) epitope-specificity of CD4+ T cells, against any selected antigen. This technology enables the generation and molecular characterization of TCRs originating from tumor-specific CD4+ helper T cells, complementing our already established approach for isolation of high affinity TCRs derived from cytotoxic CD8+ T cells. Citation Format: Milosevic Slavoljub, Ellinger Christian, Wehner Carina, Raffegerst Silke, Wilde Susanne, Weis Manon, Sailer Nadja, Schendel Dolores. Method for molecular characterization of antigens, epitopes and T cell receptors for adoptive CD4 immunotherapy [abstract]. In: Proceedings of the Second CRI-CIMT-EATI-AACR International Cancer Immunotherapy Conference: Translating Science into Survival; 2016 Sept 25-28; New York, NY. Philadelphia (PA): AACR; Cancer Immunol Res 2016;4(11 Suppl):Abstract nr A017.
    Type of Medium: Online Resource
    ISSN: 2326-6066 , 2326-6074
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2016
    detail.hit.zdb_id: 2732517-9
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  • 7
    Online Resource
    Online Resource
    Balkan Scientific Association of Agricultural Economists ; 2018
    In:  Ekonomika poljoprivrede Vol. 65, No. 1 ( 2018), p. 33-47
    In: Ekonomika poljoprivrede, Balkan Scientific Association of Agricultural Economists, Vol. 65, No. 1 ( 2018), p. 33-47
    Type of Medium: Online Resource
    ISSN: 0352-3462 , 2334-8453
    Uniform Title: Istraživanje navika potrošača u korišćenju deklaracije na prehrambenim proizvodima
    Language: English
    Publisher: Balkan Scientific Association of Agricultural Economists
    Publication Date: 2018
    detail.hit.zdb_id: 2769855-5
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  • 8
    In: European Journal of Immunology, Wiley, Vol. 34, No. 9 ( 2004-09), p. 2500-2509
    Abstract: The Epstein‐Barr virus (EBV) nuclear antigen 1 (EBNA1) is the only viral protein regularly expressed in EBV‐associated malignancies. Immune recognition of EBNA1 by CD8 + T cells is prevented by an internal glycine‐alanine repeat (GAr) which blocks proteasomal degradation. To test whether EBV‐infected cells could be recognized by T helper cells, human CD4 + T cell clones specific for EBNA1 were isolated from latently EBV‐infected individuals. These T cells, however, failed to recognize EBV‐positive target cells. To investigate whether endogenous presentation of EBNA1 epitopes on MHC class II was prevented by the GAr domain, a mutant EBV strain with an EBNA1 lacking the GAr (EBNA1ΔGA) was generated and used to establish an Epstein‐Barr virus‐immortalized lymphoblastoid B cell line (LCL). The EBNA1ΔGA LCL were not recognized by the EBNA1‐specific T cell clones either, indicating that the GAr domain does not mediate this effect. Immune recognition could be restored by overexpression of EBNA1, for which at least 60‐fold higher levels of both EBNA1 or EBNA1ΔGAr protein were required. These results demonstrate that EBNA1 evades direct recognition by CD4 + T helper cells, since its steady state level is below the threshold required for efficient presentation on MHC class II. These findings have important implications for the design of immunotherapeutic approaches to target EBV‐positive malignancies.
    Type of Medium: Online Resource
    ISSN: 0014-2980 , 1521-4141
    URL: Issue
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    Language: English
    Publisher: Wiley
    Publication Date: 2004
    detail.hit.zdb_id: 1491907-2
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  • 9
    In: Immunobiology, Elsevier BV, Vol. 219, No. 4 ( 2014-04), p. 247-260
    Type of Medium: Online Resource
    ISSN: 0171-2985
    RVK:
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    Language: English
    Publisher: Elsevier BV
    Publication Date: 2014
    detail.hit.zdb_id: 2060227-3
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2021
    In:  Cancer Research Vol. 81, No. 13_Supplement ( 2021-07-01), p. 1520-1520
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 81, No. 13_Supplement ( 2021-07-01), p. 1520-1520
    Abstract: CD8+ cytotoxic T cells are the main mediators of immune responses during cancer immunotherapy. Effective T cell functionality depends on the specific interaction with major histocompatibility (MHC) class I-bound peptide antigens. Significant efforts are being dedicated to the identification of novel tumor specific antigens (TSAs), investigating not only the known proteome, but also non-coding regions of the genome, that would allow for improved discrimination between cancer cells and healthy tissues. Through extensive comparisons of tumor and healthy tissues at the transcriptional and MHC-presented peptidome levels, TSAs were identified that derived from the translation in canonical and non-canonical reading frames of non-mutated non-coding genomic regions, including 5'- and 3'-untranslated regions (UTRs), introns and intergenic regions. A remarkable feature of these TSAs is that they are shared among patients and solid tumor types, thus representing ideal targets for cancer immunotherapies, including vaccines and adoptive cell therapies. To identify TSAs that can elicit T cell responses, a high throughput screening procedure was used to investigate the immunogenicity of 47 TSAs in the context of five common HLA types. Constructs harboring the TSA sequences were developed and transfected into HLA-matched monocyte-derived dendritic cells (mDCs) that were used to stimulate autologous CD8+ T cells. TSA-reactive T cells were enriched upon stimulation with antigen-positive and -negative cells using the T cell activation marker CD137 and sorted as single cells. Reactivity of individual T cell clones towards specific TSAs was confirmed by measuring cytokine release upon co-culture with HLA-matched TSA-positive and negative cell lines. Ten immunogenic TSAs were identified with this procedure, including at least one immunogenic TSA for each of the five analyzed HLAs. For some of these antigens, specific T cells were found in multiple healthy donors. The identified immunogenic TSAs derive from a variety of non-coding regions, such as introns, 5'-UTRs and non-coding RNAs. The T cell receptor (TCR) α and β chain sequences of TSA-reactive T cell clones were identified by NGS, engineered into a retroviral expression construct and transduced into CD8+ T cells. The reactivity of TCR-transgenic T cells against TSA-positive target cells was confirmed by recognition of TSA-peptide-loaded cell lines and target cells internally processing and presenting the TSAs. In conclusion, our high throughput screening approach successfully detected immunogenic TSAs. Furthermore, it can be used for the identification of TSA-reactive TCRs, thus representing a key tool in the development of novel TCR-based cancer immunotherapies targeting this novel class of TSAs. Citation Format: Tiziana Franceschetti, Qingchuan Zhao, Krystel Vincent, Claude Perreault, Slavoljub Milosevic, Daniel Sommermeyer. Targetable immunogenic tumor specific antigens can be identified in non-coding regions of the genome [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2021; 2021 Apr 10-15 and May 17-21. Philadelphia (PA): AACR; Cancer Res 2021;81(13_Suppl):Abstract nr 1520.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2021
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
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