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  • 1
    In: Toxins, MDPI AG, Vol. 13, No. 8 ( 2021-08-09), p. 552-
    Abstract: The mycotoxin deoxynivalenol (DON), produced in wheat, barley and maize by Fusarium graminearum and Fusarium culmorum, is threatening the health of humans and animals. With its worldwide high incidence in food and feed, mitigation strategies are needed to detoxify DON, maintaining the nutritional value and palatability of decontaminated commodities. A promising technique is biological degradation, where microorganisms are used to biotransform mycotoxins into less toxic metabolites. In this study, bacterial enrichment cultures were screened for their DON detoxification potential, where DON and its potential derivatives were monitored. The residual phytotoxicity was determined through a bioassay using the aquatic plant Lemna minor L. Two bacterial enrichment cultures were found to biotransform DON into a still highly toxic metabolite for plants. Furthermore, a cytotoxic effect was observed on the cellular viability of intestinal porcine epithelial cells. Through liquid chromatography high-resolution mass spectrometry analysis, an unknown compound was detected, and tentatively characterized with a molecular weight of 30.0 Da (i.e., CH2O) higher than DON. Metabarcoding of the subsequently enriched bacterial communities revealed a shift towards the genera Sphingopyxis, Pseudoxanthomonas, Ochrobactrum and Pseudarthrobacter. This work describes the discovery of a novel bacterial DON-derived metabolite, toxic to plant and porcine cells.
    Type of Medium: Online Resource
    ISSN: 2072-6651
    Language: English
    Publisher: MDPI AG
    Publication Date: 2021
    detail.hit.zdb_id: 2518395-3
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  • 2
    In: Journal of Cleaner Production, Elsevier BV, Vol. 276 ( 2020-12), p. 124128-
    Type of Medium: Online Resource
    ISSN: 0959-6526
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2020
    detail.hit.zdb_id: 1179393-4
    detail.hit.zdb_id: 2029338-0
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  • 3
    In: Agronomy, MDPI AG, Vol. 11, No. 4 ( 2021-03-26), p. 629-
    Abstract: Biochar has previously been used in growing media blends as fertilizer or for improving plant growth, disease suppression, and as a sustainable replacement of peat. To achieve optimal circular horticulture, we propose here to reuse the biochar from spent growing media. However, it is unclear to what extent the biochar feedstock determines the mode of action of the biochar and if use of spent growing media biochar may encounter nutrient or salt problems. Differences in chemical characteristics, nutrient release, and interaction in a leaching experiment and effects on plant growth, nutrient uptake, and disease suppression in a strawberry greenhouse trial were studied for 11 biochars either processed from spent growing media or from lignocellulosic biomass. A well-studied biochar produced from oak wood was set as reference. Biochars produced from spent growing media were characterized by higher electrical conductivity, extractable and total nutrient concentrations compared with biochars produced from lignocellulosic biomass. Especially in the first phase of the leaching experiment, all biochars showed nutrient and salt release, with most prominent effects for spent growing media biochars and the reference biochar. The latter biochars were an important source of phosphorus and in particular of potassium. Only for the reference biochar, strawberry plants showed increased uptake of phosphorus, potassium and calcium, and increased chlorophyll concentration. No Bortrytis cinerea disease suppression and no increase in plant growth was observed for the tested biochars. It is concluded that spent growing media can be recycled as biochar in growing media without adverse effects compared to biochars produced from lignocellulosic biomass.
    Type of Medium: Online Resource
    ISSN: 2073-4395
    Language: English
    Publisher: MDPI AG
    Publication Date: 2021
    detail.hit.zdb_id: 2607043-1
    SSG: 23
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  • 4
    In: Agronomy, MDPI AG, Vol. 12, No. 2 ( 2022-02-08), p. 422-
    Abstract: The aim of the current study was to create a high quality growing medium blend that replaces 70 vol% peat with 40 vol% woody green compost and 30 vol% bark compost and organic fertilizers (i.e., blood meal and chitin), all locally sourced. A range of “woody composts”, i.e., green composts based on feedstock selection with mainly woody material from tree prunings, were produced for this purpose at green compost facilities. First, the woody composts were characterized chemically and biologically, including their microbial biomass and net N release. In comparison with regular green composts or vegetable, fruit and garden (VFG) waste composts, woody composts are more suitable for use in growing media due to their lower pH, EC and inorganic C content; however, the woody compost had a low N mineralization rate. Three types of composts supported a higher microbial biomass than wood fiber or bark compost. The additional mineral N release after 100 days for compost mixed with blood meal was tested for different VFG and green composts. A significantly higher additional net N release was measured for composts with higher initial mineral N concentrations (317 mg Nmin/L) as well as VFG composts (417 mg Nmin/L) than for green composts with a lower initial mineral N concentration (148 mg Nmin/L). In a last step, woody compost, bark compost, wood fiber, coir and peat were mixed in different ratios, resulting in six blends ranging from 100% peat-free to 100% peat. Two batches of woody compost were compared, and the blends were mixed with blood meal or chitin. A strong effect of both the organic fertilizer and the blend composition on the mineral N release was observed, with a clear link between the microbial biomass and the net N release. There was a significant negative correlation between the net change in microbial biomass and the net N release (R = −0.85), which implies that a larger increase in microbial biomass during incubation with the organic fertilizer resulted in less N mineralization. The blends containing woody compost scored better for nitrification activity, as the NH4-N concentrations were lower in these than for the blends without woody compost. For the peat blends, no effect on the microbial biomass was observed after addition of organic fertilizers; mineral N did increase, however. Woody composts have the potential to be used in high vol% in growing media blends, but the blends still need further optimization when supplemented with organic fertilizers.
    Type of Medium: Online Resource
    ISSN: 2073-4395
    Language: English
    Publisher: MDPI AG
    Publication Date: 2022
    detail.hit.zdb_id: 2607043-1
    SSG: 23
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  • 5
    In: Frontiers in Plant Science, Frontiers Media SA, Vol. 13 ( 2022-9-27)
    Abstract: Crop diversification in spatial and temporal patterns can optimize the synchronization of nutrients plant demand and availability in soils, as plant diversity and soil microbial communities are the main drivers of biogeochemical C and nutrient cycling. The introduction of multi-cropping in organic vegetable production can represent a key strategy to ensure efficient complementation mediated by soil microbiota, including beneficial mycorrhizal fungi. This study shows the effect of the introduction of multi-cropping in five European organic vegetable systems (South-West: Italy; North-West: Denmark and Belgium; North-East: Finland and Latvia) on: (i) soil physicochemical parameters; (ii) soil microbial biomass stoichiometry; (iii) crop root mycorrhization; (iv) bacterial and fungal diversity and composition in crop rhizosphere; (v) relative abundance of selected fungal pathogens species. In each site, three cropping systems were considered: (1) crop 1—monocropping; (2) crop 2—monocropping; (3) crop 1—crop 2—intercropping or strip cropping. Results showed that, just before harvest, multi-cropping can increase soil microbial biomass amount and shape microbial community toward a predominance of some bacteria or fungi phyla, in the function of soil nutrient availability. We mainly observed a selection effect of crop type on rhizosphere microbiota. Particularly, Bacteroidetes and Mortierellomycota relative abundances in rhizosphere soil resulted in suitable ecological indicators of the positive effect of plant diversity in field, the first ones attesting an improved C and P cycles in soil and the second ones a reduced soil pathogens' pressure. Plant diversity also increased the root mycorrhizal colonization between the intercropped crops that, when properly selected, can also reduce the relative abundance of potential soil-borne pathogens, with a positive effect on crop productivity in long term.
    Type of Medium: Online Resource
    ISSN: 1664-462X
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2022
    detail.hit.zdb_id: 2687947-5
    detail.hit.zdb_id: 2613694-6
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  • 6
    In: Phytobiomes Journal, Scientific Societies, Vol. 6, No. 4 ( 2022-12), p. 305-316
    Abstract: Nature management residues (i.e., biomass generated from the management of nature reserves) are promising peat alternatives for horticultural substrates and may have a positive effect on disease suppression because of their microbiological characteristics. Moreover, addition of fertilizer may also affect the rhizosphere microbiome and, accordingly, disease suppression. In this study, we determined the effect of two management residues in horticultural substrates (i.e., chopped heath and acidified soft rush) and two fertilization regimes (i.e., pure nitrogen fertilizer and compound fertilizer) on the suppression of Phytophthora spp. on Chamaecyparis lawsoniana. The bacterial and fungal rhizosphere community was characterized using 16S ribosomal RNA and internal transcribed spacer 2 gene metabarcoding. Soft rush with a compound fertilizer (R2) and chopped heath with a pure nitrogen fertilizer (H1) showed a disease-suppressive effect and showed the largest shifts in microbial community composition compared with peat-based substrates. The disease-suppressive treatments showed differences in their microbial communities. Different genera associated with described biocontrol agents for Phytophthora spp. were found in higher amounts in those treatments. Aspergillus and Trichoderma spp. were highly abundant in H1, while Actinomadura and Bacillus spp. had a high abundance in R2. In addition, the relative abundances of 24 bacterial and 9 fungal genera were negatively correlated with disease severity. Several of those genera, including Bacillus, Chaetomium, and Actinomadura, were significantly more abundant in one of the disease-suppressive treatments. This study shows that disease suppressiveness in sustainable horticultural substrates is dependent on fertilization and can be linked to changes in the microbial rhizosphere communities.
    Type of Medium: Online Resource
    ISSN: 2471-2906
    Language: English
    Publisher: Scientific Societies
    Publication Date: 2022
    detail.hit.zdb_id: 2897163-2
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  • 7
    In: Microbial Biotechnology, Wiley, Vol. 14, No. 4 ( 2021-07), p. 1594-1612
    Abstract: Phosphorus (P) is despite its omnipresence in soils often unavailable for plants. Rhizobacteria able to solubilize P are therefore crucial to avoid P deficiency. Selection for phosphate‐solubilizing bacteria (PSB) is frequently done in vitro ; however, rhizosphere competence is herein overlooked. Therefore, we developed an in planta enrichment concept enabling simultaneous microbial selection for P‐solubilization and rhizosphere competence. We used an ecologically relevant combination of iron‐ and aluminium phosphate to select for PSB in maize ( Zea mays L.). In each consecutive enrichment, plant roots were inoculated with rhizobacterial suspensions from plants that had grown in substrate with insoluble P. To assess the plants’ P statuses, non‐destructive multispectral imaging was used for quantifying anthocyanins, a proxy for maize’s P status. After the third consecutive enrichment, plants supplied with insoluble P and inoculated with rhizobacterial suspensions showed a P status similar to plants supplied with soluble P. A parallel metabarcoding approach uncovered that the improved P status in the third enrichment coincided with a shift in the rhizobiome towards bacteria with plant growth‐promoting and P‐solubilizing capacities. Finally, further consecutive enrichment led to a functional relapse hallmarked by plants with a low P status and a second shift in the rhizobiome at the level of Azospirillaceae and Rhizobiaceae.
    Type of Medium: Online Resource
    ISSN: 1751-7915 , 1751-7915
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2406063-X
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  • 8
    In: Science of The Total Environment, Elsevier BV, Vol. 771 ( 2021-06), p. 145263-
    Type of Medium: Online Resource
    ISSN: 0048-9697
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2021
    detail.hit.zdb_id: 1498726-0
    detail.hit.zdb_id: 121506-1
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Frontiers Media SA ; 2021
    In:  Frontiers in Microbiology Vol. 12 ( 2021-4-7)
    In: Frontiers in Microbiology, Frontiers Media SA, Vol. 12 ( 2021-4-7)
    Abstract: Three characteristics are considered key for optimal use of composts in growing media: maturity, pH and organic matter content. Maturation is a critical step in the processing of composts contributing to compost quality. Blending of composts with chopped heath biomass, sieving out the larger fraction of composts and acidification of composts by adding elemental sulfur may be used either to increase organic matter content or to reduce pH for a better fit in growing media. While several studies have shown the effectiveness of these treatments to improve the use of composts in growing media, the effect of these treatments on the compost microbiome has merely been assessed before. In the present study, five immature composts were allowed to mature, and were subsequently acidified, blended or sieved. Bacterial and fungal communities of the composts were characterized and quantified using 16S rRNA and ITS2 gene metabarcoding and phospholipid fatty acid analysis. Metabolic biodiversity and activity were analyzed using Biolog EcoPlates. Compost batch was shown to be more important than maturation or optimization treatments to determine the compost microbiome. Compost maturation increased microbial diversity and favored beneficial microorganisms, which may be positive for the use of composts in growing media. Blending of composts increased microbial diversity, metabolic diversity, and metabolic activity, which may have a positive effect in growing media. Blending may be used to modify the microbiome to a certain degree in order to optimize microbiological characteristics. Acidification caused a decrease in bacterial diversity and microbial activity, which may be negative for the use in growing media, although the changes are limited. Sieving had limited effect on the microbiome of composts. Because of the limited effect on the microbiome, sieving of composts may be used flexible to improve (bio)chemical characteristics. This is the first study to assess the effects of maturation and optimization treatments to either increase organic matter content or lower pH in composts on the compost microbiome.
    Type of Medium: Online Resource
    ISSN: 1664-302X
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2021
    detail.hit.zdb_id: 2587354-4
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  • 10
    Online Resource
    Online Resource
    Frontiers Media SA ; 2021
    In:  Frontiers in Plant Science Vol. 12 ( 2021-8-23)
    In: Frontiers in Plant Science, Frontiers Media SA, Vol. 12 ( 2021-8-23)
    Abstract: Biochar has been reported to play a positive role in disease suppression against airborne pathogens in plants. The mechanisms behind this positive trait are not well-understood. In this study, we hypothesized that the attraction of plant growth-promoting rhizobacteria (PGPR) or fungi (PGPF) underlies the mechanism of biochar in plant protection. The attraction of PGPR and PGPF may either activate the innate immune system of plants or help the plants with nutrient uptake. We studied the effect of biochar in peat substrate (PS) on the susceptibility of strawberry, both on leaves and fruits, against the airborne fungal pathogen Botrytis cinerea . Biochar had a positive impact on the resistance of strawberry fruits but not the plant leaves. On leaves, the infection was more severe compared with plants without biochar in the PS. The different effects on fruits and plant leaves may indicate a trade-off between plant parts. Future studies should focus on monitoring gene expression and metabolites of strawberry fruits to investigate this potential trade-off effect. A change in the microbial community in the rhizosphere was also observed, with increased fungal diversity and higher abundances of amplicon sequence variants classified into Granulicella , Mucilaginibacter , and Byssochlamys surrounding the plant root, where the latter two were reported as biocontrol agents. The change in the microbial community was not correlated with a change in nutrient uptake by the plant in either the leaves or the fruits. A decrease in the defense gene expression in the leaves was observed. In conclusion, the decreased infection of B. cinerea in strawberry fruits mediated by the addition of biochar in the PS is most likely regulated by the changes in the microbial community.
    Type of Medium: Online Resource
    ISSN: 1664-462X
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2021
    detail.hit.zdb_id: 2687947-5
    detail.hit.zdb_id: 2613694-6
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