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Analysis of KaiA–KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods

Pattanayek, Rekha ; Williams, Dewight R ; Pattanayek, Sabuj ; [et al.]

Wiley ; 2006

In: The EMBO Journal Vol. 25, No. 9 ( 2006-5-3), p. 2017-2028

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In: The EMBO Journal, Wiley, Vol. 25, No. 9 ( 2006-5-3), p. 2017-2028

Type of Medium: Online Resource

ISSN: 0261-4189 , 1460-2075

URL: Article

DOI: 10.1038/sj.emboj.7601086

RVK:

WA 15000

Language: Unknown

Publisher: Wiley

Publication Date: 2006

detail.hit.zdb_id: 1467419-1

detail.hit.zdb_id: 586044-1

SSG: 12

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Structural model of the circadian clock KaiB–KaiC complex and mechanism for modulation of KaiC phosphorylation

Pattanayek, Rekha ; Williams, Dewight R ; Pattanayek, Sabuj ; [et al.]

Wiley ; 2008

In: The EMBO Journal Vol. 27, No. 12 ( 2008-6-18), p. 1767-1778

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In: The EMBO Journal, Wiley, Vol. 27, No. 12 ( 2008-6-18), p. 1767-1778

Type of Medium: Online Resource

ISSN: 0261-4189 , 1460-2075

URL: Article

DOI: 10.1038/emboj.2008.104

RVK:

WA 15000

Language: Unknown

Publisher: Wiley

Publication Date: 2008

detail.hit.zdb_id: 1467419-1

detail.hit.zdb_id: 586044-1

SSG: 12

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Structures of KaiC Circadian Clock Mutant Proteins: A New Phosphorylation Site at T426 and Mechanisms of Kinase, ATPase and Phosphatase

Pattanayek, Rekha ; Mori, Tetsuya ; Xu, Yao ; [et al.]

Public Library of Science (PLoS) ; 2009

In: PLoS ONE Vol. 4, No. 11 ( 2009-11-26), p. e7529-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 4, No. 11 ( 2009-11-26), p. e7529-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0007529

DOI: 10.1371/journal.pone.0007529.s001

DOI: 10.1371/journal.pone.0007529.s002

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2009

detail.hit.zdb_id: 2267670-3

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Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses

Xu, Yao ; Mori, Tetsuya ; Pattanayek, Rekha ; [et al.]

Proceedings of the National Academy of Sciences ; 2004

In: Proceedings of the National Academy of Sciences Vol. 101, No. 38 ( 2004-09-21), p. 13933-13938

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In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 101, No. 38 ( 2004-09-21), p. 13933-13938

Abstract: In cyanobacteria, KaiC is an essential hexameric clock protein that forms the core of a circadian protein complex. KaiC can be phosphorylated, and the ratio of phospho-KaiC to non-phospho-KaiC is correlated with circadian period. Structural analyses of KaiC crystals identify three potential phosphorylation sites within a 10-Å radius of the ATP binding regions that are at the T432, S431, and T426 residues in the KaiCII domains. When these residues are mutated by alanine substitution singly or in combination, KaiC phosphorylation is altered, and circadian rhythmicity is abolished. These alanine substitutions do not prevent KaiC from hexamerizing. Intriguingly, the ability of KaiC overexpression to repress its own promoter is also not prevented by alanine substitutions at these sites, implying that the capability of KaiC to repress its promoter is not sufficient to allow the clockwork to oscillate. The KaiC structure and the mutational analysis suggest that S431 and T426 may share a phosphate that can shuttle between these two residues. Because the phosphorylation status of KaiC oscillates over the daily cycle, and KaiC phosphorylation is essential for clock function as shown here, daily modulations of KaiC activity by phosphorylation at T432 and S431/T426 seem to be key components of the circadian clockwork in cyanobacteria.

Type of Medium: Online Resource

ISSN: 0027-8424 , 1091-6490

URL: Article

DOI: 10.1073/pnas.0404768101

RVK:

TA 1000

RVK:

WA 15000

Language: English

Publisher: Proceedings of the National Academy of Sciences

Publication Date: 2004

detail.hit.zdb_id: 209104-5

detail.hit.zdb_id: 1461794-8

SSG: 11

SSG: 12

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Visualizing a Circadian Clock Protein

Pattanayek, Rekha ; Wang, Jimin ; Mori, Tetsuya ; [et al.]

Elsevier BV ; 2004

In: Molecular Cell Vol. 15, No. 3 ( 2004-08), p. 375-388

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In: Molecular Cell, Elsevier BV, Vol. 15, No. 3 ( 2004-08), p. 375-388

Type of Medium: Online Resource

ISSN: 1097-2765

URL: Article

DOI: 10.1016/j.molcel.2004.07.013

Language: English

Publisher: Elsevier BV

Publication Date: 2004

detail.hit.zdb_id: 2001948-8

SSG: 12

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Crystal Structure of Homo-DNA and Natures Choice of Pentose over Hexose in the Genetic System

Egli, Martin ; Pallan, Pradeep S. ; Pattanayek, Rekha ; [et al.]

American Chemical Society (ACS) ; 2006

In: Journal of the American Chemical Society Vol. 128, No. 33 ( 2006-08-01), p. 10847-10856

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In: Journal of the American Chemical Society, American Chemical Society (ACS), Vol. 128, No. 33 ( 2006-08-01), p. 10847-10856

Type of Medium: Online Resource

ISSN: 0002-7863 , 1520-5126

URL: Article

DOI: 10.1021/ja062548x

DOI: 10.1021/ja062548x.s001

RVK:

VA 1120 ; VA 1752

Language: English

Publisher: American Chemical Society (ACS)

Publication Date: 2006

detail.hit.zdb_id: 1472210-0

detail.hit.zdb_id: 3155-0

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CryoEM and Molecular Dynamics of the Circadian KaiB–KaiC Complex Indicates That KaiB Monomers Interact with KaiC and Block ATP Binding Clefts

Villarreal, Seth A. ; Pattanayek, Rekha ; Williams, Dewight R. ; [et al.]

Elsevier BV ; 2013

In: Journal of Molecular Biology Vol. 425, No. 18 ( 2013-09), p. 3311-3324

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In: Journal of Molecular Biology, Elsevier BV, Vol. 425, No. 18 ( 2013-09), p. 3311-3324

Type of Medium: Online Resource

ISSN: 0022-2836

URL: Article

DOI: 10.1016/j.jmb.2013.06.018

Language: English

Publisher: Elsevier BV

Publication Date: 2013

detail.hit.zdb_id: 1355192-9

SSG: 12

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The CaMKII inhibitor KN93-calmodulin interaction and implications for calmodulin tuning of NaV1.5 and RyR2 function

Johnson, Christopher N. ; Pattanayek, Rekha ; Potet, Franck ; [et al.]

Elsevier BV ; 2019

In: Cell Calcium Vol. 82 ( 2019-09), p. 102063-

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In: Cell Calcium, Elsevier BV, Vol. 82 ( 2019-09), p. 102063-

Type of Medium: Online Resource

ISSN: 0143-4160

URL: Article

DOI: 10.1016/j.ceca.2019.102063

Language: English

Publisher: Elsevier BV

Publication Date: 2019

detail.hit.zdb_id: 2002623-7

SSG: 12

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Preliminary X-ray Diffraction Studies of Ribgrass Mosaic Virus

Wang, Hong ; Planchart, Antonio ; Allen, Diane ; [et al.]

Elsevier BV ; 1993

In: Journal of Molecular Biology Vol. 234, No. 3 ( 1993-12), p. 902-904

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In: Journal of Molecular Biology, Elsevier BV, Vol. 234, No. 3 ( 1993-12), p. 902-904

Type of Medium: Online Resource

ISSN: 0022-2836

URL: Article

DOI: 10.1006/jmbi.1993.1639

Language: English

Publisher: Elsevier BV

Publication Date: 1993

detail.hit.zdb_id: 1355192-9

SSG: 12

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Combined SAXS/EM Based Models of the S. elongatus Post-Translational Circadian Oscillator and its Interactions with the Output His-Kinase SasA

Pattanayek, Rekha ; Williams, Dewight R. ; Rossi, Gian ; [et al.]

Public Library of Science (PLoS) ; 2011

In: PLoS ONE Vol. 6, No. 8 ( 2011-8-24), p. e23697-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 6, No. 8 ( 2011-8-24), p. e23697-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0023697

DOI: 10.1371/journal.pone.0023697.g001

DOI: 10.1371/journal.pone.0023697.g002

DOI: 10.1371/journal.pone.0023697.g003

DOI: 10.1371/journal.pone.0023697.g004

DOI: 10.1371/journal.pone.0023697.g005

DOI: 10.1371/journal.pone.0023697.g006

DOI: 10.1371/journal.pone.0023697.g007

DOI: 10.1371/journal.pone.0023697.g008

DOI: 10.1371/journal.pone.0023697.g009

DOI: 10.1371/journal.pone.0023697.t001

DOI: 10.1371/journal.pone.0023697.t002

DOI: 10.1371/journal.pone.0023697.s001

DOI: 10.1371/journal.pone.0023697.s002

DOI: 10.1371/journal.pone.0023697.s003

DOI: 10.1371/journal.pone.0023697.s004

DOI: 10.1371/journal.pone.0023697.s005

DOI: 10.1371/journal.pone.0023697.s006

DOI: 10.1371/journal.pone.0023697.s007

DOI: 10.1371/journal.pone.0023697.s008

DOI: 10.1371/journal.pone.0023697.s009

DOI: 10.1371/journal.pone.0023697.s010

DOI: 10.1371/journal.pone.0023697.s011

DOI: 10.1371/journal.pone.0023697.s012

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2011

detail.hit.zdb_id: 2267670-3

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