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BlockLogo: Visualization of peptide and sequence motif conservation

Olsen, Lars Rønn ; Kudahl, Ulrich Johan ; Simon, Christian ; [et al.]

Elsevier BV ; 2013

In: Journal of Immunological Methods Vol. 400-401 ( 2013-12), p. 37-44

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In: Journal of Immunological Methods, Elsevier BV, Vol. 400-401 ( 2013-12), p. 37-44

Type of Medium: Online Resource

ISSN: 0022-1759

URL: Article

DOI: 10.1016/j.jim.2013.08.014

RVK:

XA 10000

Language: English

Publisher: Elsevier BV

Publication Date: 2013

detail.hit.zdb_id: 1500495-8

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Validation of suitable genes for normalization of diurnal gene expression studies in Chenopodium quinoa

Maldonado-Taipe, Nathaly ; Patirange, Dilan S. R. ; Schmöckel, Sandra M. ; [et al.]

Public Library of Science (PLoS) ; 2021

In: PLOS ONE Vol. 16, No. 3 ( 2021-3-11), p. e0233821-

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In: PLOS ONE, Public Library of Science (PLoS), Vol. 16, No. 3 ( 2021-3-11), p. e0233821-

Abstract: Quinoa depicts high nutritional quality and abiotic stress resistance, attracting strong interest in the last years. To unravel the function of candidate genes for agronomically relevant traits, studying their transcriptional activities by RT-qPCR is an important experimental approach. The accuracy of such experiments strongly depends on precise data normalization. To date, validation of potential candidate genes for normalization of diurnal expression studies has not been performed in C . quinoa . We selected eight candidate genes based on transcriptome data and literature survey, including conventionally used reference genes. We used three statistical algorithms (BestKeeper, geNorm and NormFinder) to test their stability and added further validation by a simulation-based strategy. We demonstrated that using different reference genes, including those top ranked by stability, causes significant differences among the resulting diurnal expression patterns. Our results show that isocitrate dehydrogenase enzyme ( IDH-A ) and polypyrimidine tract-binding protein ( PTB ) are suitable genes to normalize diurnal expression data of two different quinoa accessions. Moreover, we validated our reference genes by normalizing two known diurnally regulated genes, BTC1 and BBX19 . The validated reference genes obtained in this study will improve the accuracy of RT-qPCR data normalization and facilitate gene expression studies in quinoa.

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0233821

DOI: 10.1371/journal.pone.0233821.g001

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DOI: 10.1371/journal.pone.0233821.r001

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DOI: 10.1371/journal.pone.0233821.r006

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2021

detail.hit.zdb_id: 2267670-3

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Differential Gene Expression in the Brain of the African Lungfish, Protopterus annectens, after Six Days or Six Months of Aestivation in Air

Hiong, Kum C. ; Ip, Yuen K. ; Wong, Wai P. ; [et al.]

Public Library of Science (PLoS) ; 2013

In: PLoS ONE Vol. 8, No. 8 ( 2013-8-16), p. e71205-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 8, No. 8 ( 2013-8-16), p. e71205-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0071205

DOI: 10.1371/journal.pone.0071205.g001

DOI: 10.1371/journal.pone.0071205.t001

DOI: 10.1371/journal.pone.0071205.t002

DOI: 10.1371/journal.pone.0071205.t003

DOI: 10.1371/journal.pone.0071205.t004

DOI: 10.1371/journal.pone.0071205.t005

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2013

detail.hit.zdb_id: 2267670-3

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Network Analysis of Inflammatory Genes and Their Transcriptional Regulators in Coronary Artery Disease

Nair, Jiny ; Ghatge, Madankumar ; Kakkar, Vijay V. ; [et al.]

Public Library of Science (PLoS) ; 2014

In: PLoS ONE Vol. 9, No. 4 ( 2014-4-15), p. e94328-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 9, No. 4 ( 2014-4-15), p. e94328-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0094328

DOI: 10.1371/journal.pone.0094328.g001

DOI: 10.1371/journal.pone.0094328.g002

DOI: 10.1371/journal.pone.0094328.g003

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DOI: 10.1371/journal.pone.0094328.g006

DOI: 10.1371/journal.pone.0094328.t001

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DOI: 10.1371/journal.pone.0094328.s001

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DOI: 10.1371/journal.pone.0094328.s003

DOI: 10.1371/journal.pone.0094328.s004

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2014

detail.hit.zdb_id: 2267670-3

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Levels of Lycopene β-Cyclase 1 Modulate Carotenoid Gene Expression and Accumulation in Daucus carota

Moreno, Juan Camilo ; Pizarro, Lorena ; Fuentes, Paulina ; [et al.]

Public Library of Science (PLoS) ; 2013

In: PLoS ONE Vol. 8, No. 3 ( 2013-3-29), p. e58144-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 8, No. 3 ( 2013-3-29), p. e58144-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0058144

DOI: 10.1371/journal.pone.0058144.g001

DOI: 10.1371/journal.pone.0058144.g002

DOI: 10.1371/journal.pone.0058144.g003

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DOI: 10.1371/journal.pone.0058144.g007

DOI: 10.1371/journal.pone.0058144.g008

DOI: 10.1371/journal.pone.0058144.t001

DOI: 10.1371/journal.pone.0058144.s001

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2013

detail.hit.zdb_id: 2267670-3

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β-Thymosins and Hemocyte Homeostasis in a Crustacean

Saelee, Netnapa ; Noonin, Chadanat ; Nupan, Benjamas ; [et al.]

Public Library of Science (PLoS) ; 2013

In: PLoS ONE Vol. 8, No. 4 ( 2013-4-2), p. e60974-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 8, No. 4 ( 2013-4-2), p. e60974-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0060974

DOI: 10.1371/journal.pone.0060974.g001

DOI: 10.1371/journal.pone.0060974.g002

DOI: 10.1371/journal.pone.0060974.g003

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DOI: 10.1371/journal.pone.0060974.g007

DOI: 10.1371/journal.pone.0060974.s001

DOI: 10.1371/journal.pone.0060974.s002

DOI: 10.1371/journal.pone.0060974.s003

DOI: 10.1371/journal.pone.0060974.s004

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2013

detail.hit.zdb_id: 2267670-3

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MicroRNAome and Expression Profile of Developing Tooth Germ in Miniature Pigs

Li, Ang ; Song, Tieli ; Wang, Fu ; [et al.]

Public Library of Science (PLoS) ; 2012

In: PLoS ONE Vol. 7, No. 12 ( 2012-12-18), p. e52256-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 7, No. 12 ( 2012-12-18), p. e52256-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0052256

DOI: 10.1371/journal.pone.0052256.g001

DOI: 10.1371/journal.pone.0052256.g002

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DOI: 10.1371/journal.pone.0052256.s013

DOI: 10.1371/journal.pone.0052256.s014

DOI: 10.1371/journal.pone.0052256.s015

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2012

detail.hit.zdb_id: 2267670-3

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Morphological Phylogenetic Analysis of Seven Varieties of Ficus deltoidea Jack from the Malay Peninsula of Malaysia

Fatihah, Hasan N. N. ; Mat, Nashriyah ; Zaimah, Abdul R. N. ; [et al.]

Public Library of Science (PLoS) ; 2012

In: PLoS ONE Vol. 7, No. 12 ( 2012-12-20), p. e52441-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 7, No. 12 ( 2012-12-20), p. e52441-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0052441

DOI: 10.1371/journal.pone.0052441.g001

DOI: 10.1371/journal.pone.0052441.t001

DOI: 10.1371/journal.pone.0052441.t002

DOI: 10.1371/journal.pone.0052441.s001

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2012

detail.hit.zdb_id: 2267670-3

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RNA Polyadenylation Sites on the Genomes of Microorganisms, Animals, and Plants

Li, Xiu-Qing ; Du, Donglei ; Schönbach, Christian

Public Library of Science (PLoS) ; 2013

In: PLoS ONE Vol. 8, No. 11 ( 2013-11-18), p. e79511-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 8, No. 11 ( 2013-11-18), p. e79511-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0079511

DOI: 10.1371/journal.pone.0079511.g001

DOI: 10.1371/journal.pone.0079511.g002

DOI: 10.1371/journal.pone.0079511.g003

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DOI: 10.1371/journal.pone.0079511.t001

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DOI: 10.1371/journal.pone.0079511.s003

DOI: 10.1371/journal.pone.0079511.s004

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2013

detail.hit.zdb_id: 2267670-3

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Vitamin D Receptor, an Important Transcription Factor Associated with Aldosterone-Producing Adenoma

Bi, Changlong ; Li, Bo ; Du, Lili ; [et al.]

Public Library of Science (PLoS) ; 2013

In: PLoS ONE Vol. 8, No. 12 ( 2013-12-20), p. e82309-

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In: PLoS ONE, Public Library of Science (PLoS), Vol. 8, No. 12 ( 2013-12-20), p. e82309-

Type of Medium: Online Resource

ISSN: 1932-6203

URL: Article

DOI: 10.1371/journal.pone.0082309

DOI: 10.1371/journal.pone.0082309.g001

DOI: 10.1371/journal.pone.0082309.g002

DOI: 10.1371/journal.pone.0082309.t001

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DOI: 10.1371/journal.pone.0082309.t003

DOI: 10.1371/journal.pone.0082309.s001

DOI: 10.1371/journal.pone.0082309.s002

Language: English

Publisher: Public Library of Science (PLoS)

Publication Date: 2013

detail.hit.zdb_id: 2267670-3

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