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  • 1
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2022
    In:  G3 Genes|Genomes|Genetics Vol. 12, No. 12 ( 2022-12-01)
    In: G3 Genes|Genomes|Genetics, Oxford University Press (OUP), Vol. 12, No. 12 ( 2022-12-01)
    Abstract: Lactarius hatsudake is a species of Lactarius commonly found in pine forests, is edible with a delicious and nutritious fruiting body, and exhibits medicinal properties. It is an ideal natural multifunctional food with bioactive components including fungal polysaccharides, crude fiber, unsaturated fatty acids, nucleic acid derivatives, various amino acids, and vitamins. However, biological and genomic analyses of this mycorrhizal mushroom are sparse, thereby hindering large-scale cultivation. Previously, we isolated and screened L. hatsudake JH5 strains and have applied our garnered knowledge to the large-scale cultivation of mycorrhizal seedlings. In this study, we produced a high-quality genome assembly of L. hatsudake JH5 by combining Illumina paired-end and PacBio single molecule real-time sequencing, resulting in PacBio single molecule real-time reads of 7.67 Gb and Illumina Pair-End reads of 1,560 Mb. Based on the distribution of k-mer frequencies, the genome size of this strain was estimated to be 63.84 Mb (1.14% heterozygosity). Based on de novo genome assembly, the final genome size was determined to be 76.7 Mb, with scaffold N50 of 223.2 kb and N90 of 54.5 kb, and a GC content of 54.38%. BUSCO assessment showed that genome completeness was 89.0%. The N50 length of the JH5 genome was 43.6% longer than that of the previously published L. hatsudake MG20 genome. This high-quality L. hatsudake genome assembly will facilitate research on the functional genome, molecular breeding, yield enhancement, and sustainability of L. hatsudake cultivation.
    Type of Medium: Online Resource
    ISSN: 2160-1836
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2022
    detail.hit.zdb_id: 2629978-1
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  • 2
    In: BMC Plant Biology, Springer Science and Business Media LLC, Vol. 24, No. 1 ( 2024-04-09)
    Abstract: Orchidaceae is one of the largest groups of angiosperms, and most species have high economic value and scientific research value due to their ornamental and medicinal properties. In China, Chinese Cymbidium is a popular ornamental orchid with high economic value and a long history. However, to date, no detailed information on the mitochondrial genome of any species of Chinese Cymbidium has been published. Results Here, we present the complete assembly and annotation of the mitochondrial genome of Cymbidium ensifolium (L.) Sw. The mitogenome of C. ensifolium was 560,647 bp in length and consisted of 19 circular subgenomes ranging in size from 21,995 bp to 48,212 bp. The genome encoded 35 protein-coding genes, 36 tRNAs, 3 rRNAs, and 3405 ORFs. Repeat sequence analysis and prediction of RNA editing sites revealed a total of 915 dispersed repeats, 162 simple repeats, 45 tandem repeats, and 530 RNA editing sites. Analysis of codon usage showed a preference for codons ending in A/T. Interorganellar DNA transfer was identified in 13 of the 19 chromosomes, with plastid-derived DNA fragments representing 6.81% of the C. ensifolium mitochondrial genome. The homologous fragments of the mitochondrial genome and nuclear genome were also analysed. Comparative analysis showed that the GC content was conserved, but the size, structure, and gene content of the mitogenomes varied greatly among plants with multichromosomal mitogenome structure. Phylogenetic analysis based on the mitogenomes reflected the evolutionary and taxonomic statuses of C. ensifolium . Interestingly, compared with the mitogenomes of Cymbidium lancifolium Hook. and Cymbidium macrorhizon Lindl., the mitogenome of C. ensifolium lost 8 ribosomal protein-coding genes. Conclusion In this study, we assembled and annotated the mitogenome of C. ensifolium and compared it with the mitogenomes of other Liliidae and plants with multichromosomal mitogenome structures. Our findings enrich the mitochondrial genome database of orchid plants and reveal the rapid structural evolution of Cymbidium mitochondrial genomes, highlighting the potential for mitochondrial genes to help decipher plant evolutionary history.
    Type of Medium: Online Resource
    ISSN: 1471-2229
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2024
    detail.hit.zdb_id: 2059868-3
    SSG: 12
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  • 3
    In: Spinal Cord, Springer Science and Business Media LLC, Vol. 58, No. 2 ( 2020-02), p. 216-223
    Type of Medium: Online Resource
    ISSN: 1362-4393 , 1476-5624
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2020
    detail.hit.zdb_id: 2011853-3
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  • 4
    In: Microorganisms, MDPI AG, Vol. 11, No. 9 ( 2023-09-11), p. 2279-
    Abstract: Lactarius hatsudake Tanaka is a mycorrhizal edible mushroom with rich economic and nutritional value. Although it is artificially planted, its yield is unstable. Soil fungi, including L. hatsudake, coexist with many other microorganisms and plants. Therefore, complex microbial communities have an influence on the fruiting body formation of L. hatsudake. L. hatsudake and its interactions with the rest of the fungal community over time are not completely understood. In this study, we performed high-throughput sequencing of microorganisms in the basal soil of the fruiting body (JT), mycorrhizosphere soil (JG), and non-mushroom-producing soil (CK) in a 6-year-old L. hatsudake plantation at harvest. The results showed that the soil of the L. hatsudake plantation was rich in fungal communities and a total of 10 phyla, 19 classes, 53 orders, 90 families, 139 genera, and 149 species of fungi were detected. At the phylum level, the major groups were Basidiomycota and Ascomycota. At the genus level, the dominant groups were Lactarius, Trichoderma, Suillus, and Penicillium. Among them, L. hatsudake had an absolute dominant position in the soil fungal community of the plantation, and was the only group of Lactarius in the plantation soil. Penicillium cryptum and Penicillium adametzii were unique to the JT soil sample. Chaetopsphaeria, Myxocephala, Devriesia, and Psathyrella were positively correlated with L. hatsudake. In the constructed fungal network, the total number of nodes were ranked in descending order as JG (441) 〉 CK (405) 〉 JT (399), while the total number of edges were ranked in descending order as CK (1360) 〉 JG (647) 〉 JT (586). Analysis of the fungal assembly process revealed that groups CK and JG have determinative processes that dominated community building, while the JT group exhibited a dominant random process with a 0.60 probability. The results indicated that L. hatsudake was successfully colonized in the plantation soil. During harvest, the CK group exhibited the largest network size and the most complex fungal interactions, while the fungal community structure in the mushroom cultivation zone (JT and JG) was stable and less susceptible to external environmental interference. L. hatsudake affects the fungal community in the soil surrounding its fruiting body.
    Type of Medium: Online Resource
    ISSN: 2076-2607
    Language: English
    Publisher: MDPI AG
    Publication Date: 2023
    detail.hit.zdb_id: 2720891-6
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  • 5
    In: Journal of Phytopathology, Wiley, Vol. 164, No. 11-12 ( 2016-12), p. 1012-1021
    Abstract: In this study, 76 bacterial strains were isolated from the rhizosphere soil of pepper. Of these, 23 bacterial isolates capable of inhibiting Phytophthora capsici growth were selected. Among the antagonistic bacteria, one strain, IBFCBF ‐1 showed the strongest antagonistic activity, and was identified as Bacillus amyloliquefaciens based on the results of 16S rRNA gene sequence analysis, physiological and biochemical testing, and morphological characteristics. When tested with a dual‐culture method and with laboratory greenhouse studies, the strain IBFCBF ‐1 was found to be a potential biocontrol agent for controlling the plant pathogen, P .  capsici . Moreover, it showed high efficiency and broad‐spectrum antifungal properties in vitro . Under greenhouse conditions, IBFCBF ‐1 could significantly promote the growth of pepper seedlings, and was able to solubilize phosphate, and produce indole acetic acid ( IAA ) and ammonia. This study clearly demonstrated that IBFCBF ‐1 is a potential candidate exhibiting phytophthora blight‐suppressive and plant growth‐promoting effects on pepper.
    Type of Medium: Online Resource
    ISSN: 0931-1785 , 1439-0434
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2016
    detail.hit.zdb_id: 2020539-9
    SSG: 12
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  • 6
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2020
    In:  BMC Health Services Research Vol. 20, No. 1 ( 2020-12)
    In: BMC Health Services Research, Springer Science and Business Media LLC, Vol. 20, No. 1 ( 2020-12)
    Abstract: Specialized Institution-Based Rehabilitation (SIBR) is the cornerstone of care and treatment for individuals with spinal cord injury, but most people with chronic spinal cord injury (CSCI) living in China have no SIBR experience after acute care hospital discharge. In 2009, an SIBR facility was set up in Shanghai (China) to fill this important gap in care. The purpose of the study was to evaluate the effectiveness of an integrated rehabilitation training program among individuals with CSCI living in Shanghai. Methods A within-subject pre-posttest design was used to evaluate the SIBR. The sample included 455 individuals ≥1 year post-SCI, who were older than 18 years of age and were enrolled in a rehabilitation center in Shanghai, China, between 2013 and 2019. The data included individuals’ sociodemographic and injury characteristics, and twenty-three indicators were used as outcome measurements to evaluate basic life skills and their applications in family and social life. Multivariate linear regression was conducted to determine which factors might have influenced the effectiveness of the SIBR. Results All basic life skills and their applications in family and social life were improved, but with variations across socio-demographics. Female individuals with CSCI had better outcomes in basic life skills than did males. In terms of basic life skills and their applications in family and social life, individuals with a low level (thoracic or lumbosacral) of injury achieved more significant functional gains than those with a higher level (cervical). The baseline score was also a relevant factor in functional outcome. Conclusions Even for individuals with a long SCI history, SIBR training can improve basic life skills and the applications of those skills in family and social life settings.
    Type of Medium: Online Resource
    ISSN: 1472-6963
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2020
    detail.hit.zdb_id: 2050434-2
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  • 7
    Online Resource
    Online Resource
    World Scientific Pub Co Pte Ltd ; 2022
    In:  International Journal of Structural Stability and Dynamics Vol. 22, No. 05 ( 2022-04)
    In: International Journal of Structural Stability and Dynamics, World Scientific Pub Co Pte Ltd, Vol. 22, No. 05 ( 2022-04)
    Abstract: To evaluate the crosswind stability (overturning and sideslip) of vehicles driving on the bridge, obtaining critical wind speed is essential. The traditional method is based on the aerodynamic forces of moving vehicles on the bridge and the analysis of force equilibrations. However, various shapes of the bridge make the flow field around the vehicle on the bridge very complicated to obtain. In this paper, a simplified method is introduced to calculate the critical wind speeds of moving vehicles on bridges based on the influence of coefficients of the wind environment on the bridge and the aerodynamic forces of moving vehicles on open fields. The aerodynamic forces of moving vehicles are simulated with dynamic mesh techniques. Besides, the characteristics of the wind environment on the bridge deck are studied to evaluate the driving safety and determine the influence coefficient. To further demonstrate the reliability, critical wind speed in different road conditions of the proposed simplified method shows very good agreement with the traditional method.
    Type of Medium: Online Resource
    ISSN: 0219-4554 , 1793-6764
    Language: English
    Publisher: World Scientific Pub Co Pte Ltd
    Publication Date: 2022
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  • 8
    In: Forests, MDPI AG, Vol. 13, No. 12 ( 2022-12-16), p. 2162-
    Abstract: As important decomposers and plant symbionts, soil fungal communities play a major role in remediating heavy-metal-polluted soils. However, the diversity and structures of fungal communities generally remain unclear in mining areas. This study aimed to assess the rhizospheric fungal-community composition of Masson pine (Pinus massoniana) in the lead-zinc mining area of Suxian District, Hunan Province, China. This experiment undertook the following three treatments: Masson pine inoculated with or not inoculated with Suillus luteus, and bulk soil without plants as a control. The results thereof showed that inoculation of ectomycorrhizal fungi could enlarge plants’ capability to absorb heavy metals and secrete soil enzymes. The richness and diversity of fungi in the rhizospheric soil were significantly higher than of those in the bulk soil (p 〈 0.05), but no significant difference was noted between the rhizospheric soils inoculated with and not inoculated with ectomycorrhizal (ECM) fungi as the community structure changed. The rhizospheric fungi belonged to 6 phyla, 25 classes, 65 orders, 115 families, and 150 genera, and the dominant phyla were Chytridiomycota (50.49%), Ascomycota (38.54%), and Basidiomycota (9.02%). Through use of LEfSe and heatmapping, the relative abundances of Suillus, Paraglomus, Agaricus, and Tulasnella were found to be the highest in the soil with ECM fungus inoculation. RDA showed that the community structure nearly changed with ECM-fungus inoculation; this was significantly related to soil water content, the carbon–nitrogen ratio, bulk density, available potassium, and soil enzymes. Altogether, inoculation with ECM fungi may change the habitation environments of microorganisms and dominant fungi in soil, providing keystone screenings in heavy-metal-contaminated mining areas.
    Type of Medium: Online Resource
    ISSN: 1999-4907
    Language: English
    Publisher: MDPI AG
    Publication Date: 2022
    detail.hit.zdb_id: 2527081-3
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  • 9
    In: International Immunopharmacology, Elsevier BV, Vol. 35 ( 2016-06), p. 1-6
    Type of Medium: Online Resource
    ISSN: 1567-5769
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2016
    detail.hit.zdb_id: 2049924-3
    SSG: 15,3
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  • 10
    Online Resource
    Online Resource
    Elsevier BV ; 2002
    In:  Marine Pollution Bulletin Vol. 45, No. 1-12 ( 2002-9), p. 290-294
    In: Marine Pollution Bulletin, Elsevier BV, Vol. 45, No. 1-12 ( 2002-9), p. 290-294
    Type of Medium: Online Resource
    ISSN: 0025-326X
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2002
    detail.hit.zdb_id: 414337-1
    detail.hit.zdb_id: 2001296-2
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