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  • 1
    Online Resource
    Online Resource
    Cambridge University Press (CUP) ; 2019
    In:  Weed Science Vol. 67, No. 4 ( 2019-07), p. 412-418
    In: Weed Science, Cambridge University Press (CUP), Vol. 67, No. 4 ( 2019-07), p. 412-418
    Abstract: Waterhemp [ Amaranthus tuberculatus (Moq.) J. D. Sauer] and Palmer amaranth ( Amaranthus palmeri S. Watson) are troublesome weeds of row-crop production in the United States. Their dioecious reproductive systems ensure outcrossing, facilitating rapid evolution and distribution of resistances to multiple herbicides. Little is known, however, about the genetic basis of dioecy in Amaranthus species. In this work, we use restriction site–associated DNA sequencing (RAD-Seq) to investigate the genetic basis of sex determination in A. tuberculatus and A. palmeri . For each species, approximately 200 plants of each sex were sampled and used to create RAD-Seq libraries. The resulting libraries were separately bar-coded and then pooled for sequencing with the Illumina platform, yielding millions of 64-bp reads. These reads were analyzed to identify sex-specific and sex-biased sequences. We identified 345 male-specific sequences from the A. palmeri data set and 2,754 male-specific sequences in A. tuberculatus . An unexpected 723 female-specific sequences were identified in a subset of the A. tuberculatus females; subsequent research, however, indicated female specificity of these markers was limited to the population from which they were identified. Primer sets designed to specifically amplify male-specific sequences were tested for accuracy on multiple, geographically distinct populations of A. tuberculatus and A. palmeri , as well as other Amaranthus species. Two primer sets for A. palmeri and four primer sets for A. tuberculatus were each able to distinguish between male and female plants with at least 95% accuracy. In the near term, sex-specific markers will be useful to the A. tuberculatus and A. palmeri research communities (e.g., to predict sex for crossing experiments). In the long-term, this research will provide the foundational tools for detailed investigations into the molecular biology and evolution of dioecy in weedy Amaranthus species.
    Type of Medium: Online Resource
    ISSN: 0043-1745 , 1550-2759
    Language: English
    Publisher: Cambridge University Press (CUP)
    Publication Date: 2019
    detail.hit.zdb_id: 2123881-9
    SSG: 12
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  • 2
    In: Frontiers in Agronomy, Frontiers Media SA, Vol. 4 ( 2022-6-1)
    Abstract: The availability of effective weed management tools against waterhemp ( Amaranthus tuberculatus ) is crucial to maintain profitable production of snap bean ( Phaseolus vulgaris L.). Preemergence herbicides enable the crop to gain a size advantage over the weed, but the few preemergence herbicides registered in snap bean have poor control of waterhemp. Sulfentrazone, a protoporphyrinogen oxidase (PPO) -inhibiting herbicide, provides significant control of waterhemp and other problematic weeds. However, crop tolerance to the herbicide is poorly known. To quantify snap bean tolerance to sulfentrazone and investigate the underlying tolerance mechanism(s), a genome-wide association mapping study was conducted using field-collected data on a snap bean diversity panel. Response to a preemergence application of sulfentrazone was measured using plant population density and shoot biomass variables. High levels of crop tolerance were found in several entries including Bush Romano 71, Navarro, and Flamata. Snap bean tolerance to sulfentrazone is associated with multiple genomic regions, indicating the trait is likely a non-target site resistance (NTSR). Seed size is partially responsible for the tolerance, thus the genetic factors conditioning sulfentrazone tolerance are likely a combination of those driven indirectly by seed size/weight and those acting directly on the metabolism of the herbicide or ameliorating its damage. In this study, several cytochrome P450 and ABC transporter genes were localized in associated genomic regions. Alleles conditioning snap bean tolerance to sulfentrazone identified in the diversity panel shed light on herbicide metabolism and could be used in snap bean improvement.
    Type of Medium: Online Resource
    ISSN: 2673-3218
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2022
    detail.hit.zdb_id: 3017794-7
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  • 3
    In: Pest Management Science, Wiley, Vol. 74, No. 10 ( 2018-10), p. 2356-2362
    Abstract: Synthetic auxins such as 2,4‐dichlorophenoxyacetic acid (2,4‐D) have been widely used for selective control of broadleaf weeds since the mid‐1940s. In 2009, an Amaranthus tuberculatus (common waterhemp) population with 10‐fold resistance to 2,4‐D was found in Nebraska, USA. The 2,4‐D resistance mechanism was examined by conducting [ 14 C] 2,4‐D absorption, translocation and metabolism experiments. RESULTS No differences were found in 2,4‐D absorption or translocation between resistant and susceptible A. tuberculatus plants. Resistant plants metabolized [ 14 C] 2,4‐D more rapidly than did susceptible plants. The half‐life of [ 14 C] 2,4‐D in susceptible plants was 105 h, compared with 22 h in resistant plants. Pretreatment with the cytochrome P450 inhibitor malathion inhibited [ 14 C] 2,4‐D metabolism in resistant plants and reduced the 2,4‐D dose required for 50% growth inhibition (GR 50 ) of resistant plants by 7‐fold to 27 g ha ‐1 , similar to the GR 50 for susceptible plants in the absence of malathion. CONCLUSION Our results demonstrate that rapid 2,4‐D metabolism is a contributing factor to resistance in A. tuberculatus , potentially mediated by cytochrome P450. Metabolism‐based resistance to 2,4‐D could pose a serious challenge for A. tuberculatus control because of the potential for cross‐resistance to other herbicides. © 2017 Society of Chemical Industry
    Type of Medium: Online Resource
    ISSN: 1526-498X , 1526-4998
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2003455-6
    SSG: 12
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  • 4
    In: Crop Protection, Elsevier BV, Vol. 22, No. 2 ( 2003-03), p. 375-380
    Type of Medium: Online Resource
    ISSN: 0261-2194
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2003
    detail.hit.zdb_id: 2020750-5
    SSG: 12
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  • 5
    In: Weed Technology, Cambridge University Press (CUP), Vol. 36, No. 1 ( 2022-02), p. 48-55
    Abstract: Owing to the lack of effective POST herbicide options, producers typically rely on nicosulfuron as the main POST grass herbicide in sweet corn production systems. In 2019, a Wisconsin sweet corn producer reported fall panicum control escapes after spraying nicosulfuron. Seeds from mature plants were collected to (1) measure fall panicum response to acetolactate synthase (ALS)-inhibiting herbicides, (2) elucidate the resistance mechanism, and (3) evaluate its response to alternative POST herbicides. Greenhouse and laboratory investigations were conducted to assess fall panicum response to ALS-inhibiting herbicides and elucidate the resistance mechanism. Dose–response results showed that fall panicum was highly resistant to nicosulfuron with a resistance ratio of 〉 12.9-fold (survived rates 〉 254 g ai ha −1 , or 8× the field label rate). Molecular and genetic studies indicated that there are multiple ALS gene copies in fall panicum and that resistance was due to a mutation in one copy, resulting in an Asp-376-Glu amino acid substitution. Additional greenhouse experiments indicate that clethodim (105 g ai ha −1 ), quizalofop-p-ethyl (70 g ae ha −1 ), glyphosate (864 g ae ha −1 ), and glufosinate (650 g ai ha −1 ) are effective POST options to manage the ALS-resistant fall panicum ( 〉 90.0% control and 96.8% biomass reduction) in rotational years. The 4-hydroxyphenylpyruvate dioxygenase (HPPD)-inhibiting herbicides isoxaflutole (105 g ai ha −1 ), mesotrione (105 g ai ha −1 ), tembotrione (92 g ai ha −1 ), and tolpyralate (39 g ai ha −1 ) did not provide effective POST fall panicum control. Because these herbicides are commonly used for POST weed control in sweet corn, more investigations are required to evaluate combinations of HPPD-inhibiting herbicides with herbicides from other sites of action for POST fall panicum control. Herein we confirm the first case of herbicide resistance in fall panicum in the United States.
    Type of Medium: Online Resource
    ISSN: 0890-037X , 1550-2740
    Language: English
    Publisher: Cambridge University Press (CUP)
    Publication Date: 2022
    detail.hit.zdb_id: 2119100-1
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  • 6
    In: Evolutionary Applications, Wiley, Vol. 6, No. 8 ( 2013-12), p. 1218-1221
    Abstract: Synthetic herbicides have been used globally to control weeds in major field crops. This has imposed a strong selection for any trait that enables plant populations to survive and reproduce in the presence of the herbicide. Herbicide resistance in weeds must be minimized because it is a major limiting factor to food security in global agriculture. This represents a huge challenge that will require great research efforts to develop control strategies as alternatives to the dominant and almost exclusive practice of weed control by herbicides. Weed scientists, plant ecologists and evolutionary biologists should join forces and work towards an improved and more integrated understanding of resistance across all scales. This approach will likely facilitate the design of innovative solutions to the global herbicide resistance challenge.
    Type of Medium: Online Resource
    ISSN: 1752-4571 , 1752-4571
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2013
    detail.hit.zdb_id: 2405496-3
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  • 7
    Online Resource
    Online Resource
    American Chemical Society (ACS) ; 2008
    In:  Journal of Agricultural and Food Chemistry Vol. 56, No. 15 ( 2008-08-01), p. 6355-6363
    In: Journal of Agricultural and Food Chemistry, American Chemical Society (ACS), Vol. 56, No. 15 ( 2008-08-01), p. 6355-6363
    Type of Medium: Online Resource
    ISSN: 0021-8561 , 1520-5118
    Language: English
    Publisher: American Chemical Society (ACS)
    Publication Date: 2008
    detail.hit.zdb_id: 1483109-0
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  • 8
    In: Weed Science, Cambridge University Press (CUP), Vol. 65, No. 6 ( 2017-11), p. 743-754
    Abstract: A 2,4-D-resistant tall waterhemp population (FS) from Nebraska was evaluated for resistance to other TIR1 auxin receptor herbicides and to herbicides having alternative mechanisms of action using greenhouse bioassays and genetic markers. Atrazine, imazethapyr, lactofen, mesotrione, glufosinate, and glyphosate were applied in a single-dose bioassay, and tissue was collected from marked plants for genetic analysis. The FS population was not injured by atrazine or by imazethapyr. Approximately 50% of the plants survived lactofen and were actively growing 28 d after treatment. The population was susceptible to mesotrione, glufosinate, and glyphosate. Ametryn, chlorimuron-ethyl, 2,4-D, aminocyclopyraclor, aminopyralid, and picloram were applied in dose–response studies. The FS population was sensitive to ametryn, and the Ser-264-Gly substitution in the D1 protein was not detected, suggesting the lack of response to atrazine is not due to a target-site mutation. The FS population exhibited less than 50% injury to chlorimuron-ethyl at application rates 20 times the labeled use rate. The Ser-653-Asn acetolactate synthase (ALS) substitution, which confers resistance to imidazolinone herbicides, was present in the FS population. However, this does not explain the lack of response to the sulfonylurea herbicide, chlorimuron-ethyl. Sequencing of a portion of the PPX2L gene did not show the ΔG210 mutation that confers resistance to protoporphyrinogen oxidase–inhibiting herbicides, suggesting that other factors were responsible for waterhemp survival after lactofen application. The FS population was confirmed to be at least 30-fold resistant to 2,4-D relative to the susceptible populations. In addition, it was at least 3-fold less sensitive to aminopyralid and picloram, two other TIR1 auxin receptor herbicides, than the 2,4-D-susceptible populations were. These data indicated that the FS population contains both target and non–target site mechanisms conferring resistance to herbicides spanning at least three mechanisms of action: TIR1 auxin receptors, ALS inhibitors, and photosystem II inhibitors.
    Type of Medium: Online Resource
    ISSN: 1550-2759
    Language: English
    Publisher: Cambridge University Press (CUP)
    Publication Date: 2017
    detail.hit.zdb_id: 2123881-9
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  • 9
    In: Weed Science, Cambridge University Press (CUP), Vol. 60, No. 3 ( 2012-09), p. 335-344
    Abstract: A population of common ragweed from Delaware was not controlled in the field by herbicides that inhibit acetolactate synthase (ALS) or protoporphyrinogen oxidase (PPO). Research was conducted to ascertain if this population was resistant to these herbicidal modes of action and, if so, to determine the resistance mechanism(s). Resistance was confirmed by dose-response studies on greenhouse-grown plants with multiple ALS- and PPO-inhibiting herbicides. DNA sequence data revealed that resistance to ALS-inhibiting herbicides was due to the previously reported W574L ALS mutation. To assist in determining the mechanism of resistance to PPO-inhibiting herbicides, an F 2 population was derived from a cross between the resistant biotype (Del-R) and a sensitive biotype (DV1-S). This population segregated in the ratio of three resistant : one sensitive when treated with fomesafen, indicating that resistance to PPO-inhibiting herbicides was conferred by a single, (incompletely) dominant, nuclear gene. Sequences of the target-site genes, PPX1 and PPX2 , for PPO-inhibiting herbicides were obtained through the screening of a common ragweed cDNA library and subsequent cDNA extension (5′-RACE). Molecular marker analysis with the F 2 population revealed that the PPX2 gene cosegregated with resistance to PPO-inhibiting herbicides. A mutation substituting an arginine codon for a leucine codon at a conserved location (R98L) of the PPX2 gene was suspected of being responsible for resistance. By using a transgenic Escherichia coli system, it was demonstrated that the R98L mutation was sufficient to confer resistance to PPO-inhibiting herbicides. The level of resistance to acifluorfen conferred by the R98L mutation in the E. coli system was about 31-fold, similar to the level of resistance seen in the whole-plant dose-response study. Last, a DNA-based assay was developed to identify the presence or absence of the common ragweed PPX2 R98L mutation. The R98L PPX2 mutation is the second mechanism identified for evolved resistance to PPO-inhibiting herbicides.
    Type of Medium: Online Resource
    ISSN: 0043-1745 , 1550-2759
    Language: English
    Publisher: Cambridge University Press (CUP)
    Publication Date: 2012
    detail.hit.zdb_id: 2123881-9
    SSG: 12
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  • 10
    In: Pest Management Science, Wiley, Vol. 74, No. 10 ( 2018-10), p. 2216-2225
    Abstract: There have been previous calls for, and efforts focused on, realizing the power and potential of weed genomics for better understanding of weeds. Sustained advances in genome sequencing and assembly technologies now make it possible for individual research groups to generate reference genomes for multiple weed species at reasonable costs. Here, we present the outcomes from several meetings, discussions, and workshops focused on establishing an International Weed Genomics Consortium (IWGC) for a coordinated international effort in weed genomics. We review the ‘state of the art’ in genomics and weed genomics, including technologies, applications, and on‐going weed genome projects. We also report the outcomes from a workshop and a global survey of the weed science community to identify priority species, key biological questions, and weed management applications that can be addressed through greater availability of, and access to, genomic resources. Major focus areas include the evolution of herbicide resistance and weedy traits, the development of molecular diagnostics, and the identification of novel targets and approaches for weed management. There is increasing interest in, and need for, weed genomics, and the establishment of the IWGC will provide the necessary global platform for communication and coordination of weed genomics research. © 2018 Society of Chemical Industry
    Type of Medium: Online Resource
    ISSN: 1526-498X , 1526-4998
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2003455-6
    SSG: 12
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