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  • 1
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2015
    In:  Cellular and Molecular Life Sciences Vol. 72, No. 4 ( 2015-2), p. 729-757
    In: Cellular and Molecular Life Sciences, Springer Science and Business Media LLC, Vol. 72, No. 4 ( 2015-2), p. 729-757
    Type of Medium: Online Resource
    ISSN: 1420-682X , 1420-9071
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2015
    detail.hit.zdb_id: 1458497-9
    SSG: 12
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  • 2
    In: Journal of Translational Medicine, Springer Science and Business Media LLC, Vol. 14, No. 1 ( 2016-12)
    Type of Medium: Online Resource
    ISSN: 1479-5876
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2016
    detail.hit.zdb_id: 2118570-0
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  • 3
    In: Oncotarget, Impact Journals, LLC, Vol. 5, No. 22 ( 2014-11-30), p. 11017-11028
    Type of Medium: Online Resource
    ISSN: 1949-2553
    URL: Issue
    Language: English
    Publisher: Impact Journals, LLC
    Publication Date: 2014
    detail.hit.zdb_id: 2560162-3
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  • 4
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2009
    In:  BMC Cancer Vol. 9, No. 1 ( 2009-12)
    In: BMC Cancer, Springer Science and Business Media LLC, Vol. 9, No. 1 ( 2009-12)
    Abstract: The DNA damage by platinum cytostatics is thought to be the main cause of their cytotoxicity. Therefore the measurement of the DNA damage induced by cis- and carboplatin should reflect the sensitivity of cancer cells toward the platinum chemotherapeutics. Methods DNA damage induced by cis- and carboplatin in primary cells of ovarian carcinomas was determined by the alkaline comet assay. In parallel, the reduction of cell viability was measured by the fluorescein diacetate (FDA) hydrolysis assay. Results While in the comet assay the isolated cells showed a high degree of DNA damage after a 24 h treatment, cell viability revealed no cytotoxicity after that incubation time. The individual sensitivities to DNA damage of 12 tumour biopsies differed up to a factor of about 3. DNA damage after a one day treatment with cis- or carboplatin correlated well with the cytotoxic effects after a 7 day treatment (r = 0,942 for cisplatin r = 0.971 for carboplatin). In contrast to the platinum compounds the correlation of DNA damage and cytotoxicity induced by adriamycin was low (r = 0,692), or did not exist for gemcitabine. Conclusion The measurement of DNA damage induced by cis- and carboplatin is an accurate method to determine the in vitro chemosensitivity of ovarian cancer cells towards these cytostatics, because of its quickness, sensitivity, and low cell number needed.
    Type of Medium: Online Resource
    ISSN: 1471-2407
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2009
    detail.hit.zdb_id: 2041352-X
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  • 5
    In: Molecular Cancer Therapeutics, American Association for Cancer Research (AACR), Vol. 12, No. 11_Supplement ( 2013-11-01), p. A40-A40
    Abstract: Proteomic analysis of cellular signaling networks has strongly gained in importance in the field of cancer research and treatment. In particular, there is a focus on the activation status of growth factor receptor related signaling cascades represented by phosphoproteins as key mediators of cellular signaling. For example, the inhibition of the EGF-receptor pathway has been widely integrated into clinical practice for different tumor entities, e.g. non small lung cancer and colorectal cancer. Although, predictive genetic markers of response to targeted therapy such as KRAS testing are already in use, heterogeneity in responses to such treatment has been clinically observed. In order to understand this heterogeneity on the proteome level, the activation status of cell signaling proteins has to be analyzed. In this study, we differentially analyzed basal isoform phosphorylation of selected key proteins from two EGF-receptor downstream pathways in breast cancer (n=26), non-small cell lung cancer (n=29), colorectal cancer (n= 30) and liver metastases of colorectal cancer (n= 30) using the NanoPro1000™ technology. Patient's samples were collected according to Indivumed's standard operating procedures, ensuring a high quality of tissues characterized by ischemia times below 10 minutes, comprehensive clinical data and corresponding sets of body fluids. The detailed characterization of isoform phosphorylation was conducted using established NanoPro1000™ protocols for Erk1/2, Mek1/2 and Akt. Statistical analysis of data revealed that isoform phosphorylation of Erk1/2, Mek1/2 and Akt significantly differed among individual patients, but not between tumor entities. Differences in phosphorylation patterns were characterized by the degree of overall phosphorylation, as well as individual patterns of isoform phosphorylation. This indicates that the in-depth analysis of isoform phosphorylation can reveal significant biological differences and might result in therapy relevant, predictive signatures independent of the mutation status. Hence, we established cut-off values for basal signaling molecule phosphorylation, to potentially enable the selection of patients, who will most likely benefit from targeted treatment. Based on the cut-off values we classified patients into statistical significant groups of high, moderate and low signaling molecule phosphorylation. In next steps, this classification will be further validated in terms of clinical relevance to response to targeted therapy. In summary, the NanoPro1000™ technology can be used to robustly screen a large cohort of patients for signaling molecule phosphorylation. The analysis of patients on the proteome level may be helpful to identify predictive biomarker for the development of resistance to anti-EGF-receptor treatment and thus further improve personalized medicine. Citation Information: Mol Cancer Ther 2013;12(11 Suppl):A40. Citation Format: Florian T. Unger, Jana Krüger, Janina Schaller, Giese Rebecca, Cordula Dede, Alexandra Samsen, Hartmut Juhl, Kerstin A. David. Detection of Erk1/2, Mek1/2, and Akt isoform phosphorylation in tumors of 115 patients with different cancer types using the NanoPro™1000 technology. [abstract] . In: Proceedings of the AACR-NCI-EORTC International Conference: Molecular Targets and Cancer Therapeutics; 2013 Oct 19-23; Boston, MA. Philadelphia (PA): AACR; Mol Cancer Ther 2013;12(11 Suppl):Abstract nr A40.
    Type of Medium: Online Resource
    ISSN: 1535-7163 , 1538-8514
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2013
    detail.hit.zdb_id: 2062135-8
    SSG: 12
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  • 6
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2015
    In:  Metabolomics Vol. 11, No. 6 ( 2015-12), p. 1769-1778
    In: Metabolomics, Springer Science and Business Media LLC, Vol. 11, No. 6 ( 2015-12), p. 1769-1778
    Type of Medium: Online Resource
    ISSN: 1573-3882 , 1573-3890
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2015
    detail.hit.zdb_id: 2182289-X
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  • 7
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2016
    In:  Cancer Research Vol. 76, No. 14_Supplement ( 2016-07-15), p. 3989-3989
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 76, No. 14_Supplement ( 2016-07-15), p. 3989-3989
    Abstract: Targeted therapy in personalized medicine is often affected by resistance mechanisms, such as activating mutations of signaling molecules and signaling pathway bypasses. It has become obvious that targeted therapy of patients has to be monitored by taking biopsies on a regular basis. Therefore, laboratory methods have to be optimized to be able to handle minute amounts of biospecimen, e.g. biopsies. In this study we are presenting the development of a Simple Western Size assay and a quantitative Real-time PCR assay for the analysis of AXL protein and gene expression in biopsies. AXL, a tyrosine kinase receptor, is expressed in a variety of cancers and the most highly expressed gene in preclinical models with acquired resistance, and second most common alteration in EGFR (epidermal growth factor receptor) inhibitor-resistant tumors, behind the T790M mutation. Up-regulation of AXL is shown to be predictive for lack of response to ErbB family receptor-targeted inhibitors, e.g. to Her2-targeted agents. Protein expression was examined by Simple Western Size technology and gene expression was analyzed using quantitative Real-time PCR. For assay development, high and low AXL expressing breast cancer cell lines were used to establish “fit for purpose” assays. Subsequently, Her2-positive and Her2-negative clinical samples from breast cancer patients were analyzed by screening AXL gene and protein expression. In this study, we developed and validated an assay for the detection of AXL protein expression using the Simple Western technology. This highly sensitive technology enables high-throughput screening of extremely small sample amounts such as biopsies or laser capture microdissected material. Therefore, the assay is well-suited for the monitoring of patients by using biopsies. Our results showed a broad linear dynamic range in both, high and low AXL expressing cell lines as well as a high reproducibility between multiple runs. The protein loading range suitable to detect AXL within whole cell lysates showed a lower limit of detection of 10 ng of total protein. AXL protein expression results were highly comparable to AXL gene expression results in analyzed breast cancer cell lines and breast cancer patient samples. This newly developed assay will allow us to analyze and quantify AXL protein expression profiles in breast cancer tissue and subsequently correlate them with e.g. Her-2 expression status. The elucidation of networks and mechanisms underlying drug resistance will greatly improve the development of new drugs and promote personalized therapy. In order to gain scientific knowledge regarding gene and protein expression of resistance relevant marker, e.g. AXL, it is mandatory to establish assays that are very robust, sensitive and furthermore, if not most important, applicable to amounts of biospecimen being collected in the clinical setting. Citation Format: Florian T. Unger, Kristina Bernoth, Nicole Lange, Hartmut Juhl, Kerstin A. David. Analysis of minute amounts of clinical biospecimen for the AXL receptor expression using real-time PCR and Simple Western size technology. [abstract]. In: Proceedings of the 107th Annual Meeting of the American Association for Cancer Research; 2016 Apr 16-20; New Orleans, LA. Philadelphia (PA): AACR; Cancer Res 2016;76(14 Suppl):Abstract nr 3989.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2016
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
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  • 8
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 73, No. 8_Supplement ( 2013-04-15), p. 2408-2408
    Abstract: Proteomic analysis of cellular signaling networks has strongly gained in importance in the field of cancer research and treatment. In particular, there is a focus on the activation status of growth factor receptor related signaling cascades represented by phosphoproteins, as key mediators of cellular signaling. For example, the inhibition of the EGF-receptor pathway has been widely integrated into clinical practice for different tumor entities, e.g. non small lung cancer and colorectal cancer. Although, predictive genetic markers of response to targeted therapy such as KRAS testing are already in use, heterogeneity in responses to treatment has been clinically observed. In order to understand this heterogeneity on the proteome level, the activation status of cell signaling proteins has to be analyzed. The in-depth analysis of isoform phosphorylation can potentially reveal significant biological differences in activation patterns and might result in predictive signatures. In this study, we differentially analyzed basal isoform phosphorylations of selected key proteins of two EGF-receptor downstream pathways, in four primary colorectal tumors and their corresponding metastases using the NanoPro1000 technology. Patient's biospecimen were collected according to standard operating procedures, ensuring a high quality of tissues characterized by ischemia times below 10 minutes, comprehensive clinical data and corresponding sets of body fluids. The detailed characterization of isoform phosphorylations was conducted using the recently introduced NanoPro1000 technology. This assay provides the separation of phospho protein isoforms by high-resolution isoelectric focusing (IEF) combined with a specific, antibody based detection. In addition to these data, the mutation status of selected, clinical relevant genes (KRAS, BRAF and PIK3CA) was determined in primary and metastatic tumor samples using Sanger sequencing. Among the analyzed primary tumors, there were two KRAS mutants, one BRAF mutant and one wild type tumor. Identical results were found in the matched metastasis. NanoPro1000 analysis revealed that isoform phosphorylation of ERK1/2, AKT and MEK1/2 differed among patients, as well as primary tumors and metastases. For example, ERK1 showed a tendency to be higher mono- and dual-phosphorylated in the primary tumors, whereas mono-phosphorylated ERK2 was elevated in metastases. However, a correlation to the mutation status was not found. These differences may explain the heterogeneity of individual responses to target anticancer treatment among patients, independent of their mutation status. Therefore, the NanoPro1000 technology can potentially be useful to identify predictive biomarker for the development of resistance to anti-EGF-receptor treatment and further improve personalized medicine. Citation Format: Florian T. Unger, Jana Krueger, Janina Schaller, Cordula Dede, Alexandra Samsen, Hartmut Juhl, Kerstin A. David. Comparison of ERK, AKT and MEK isoform phosphorylations between primary and corresponding metastatic colorectal carcinoma lesions using the NanoPro1000 technology. [abstract]. In: Proceedings of the 104th Annual Meeting of the American Association for Cancer Research; 2013 Apr 6-10; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2013;73(8 Suppl):Abstract nr 2408. doi:10.1158/1538-7445.AM2013-2408
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2013
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
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  • 9
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 74, No. 19_Supplement ( 2014-10-01), p. 913-913
    Abstract: In the era of targeted anticancer therapy, the proteomic analysis of cellular signaling networks has strongly gained in importance in the field of cancer research and treatment. There is scientific evidence that individual phosphorylation profiles of signaling proteins, besides the mutation status of patients` tumors, contain useful therapeutic information and their measurement has to be established in the clinical setting. Although, predictive genetic markers of response to targeted therapy such as KRAS testing are already in use, heterogeneity in responses to such treatment has been clinically observed. In order to understand this heterogeneity on the proteome level, the activation status of cell signaling proteins has to be analyzed. In addition, the comparison of basal phosphorylation levels of normal tissues and corresponding tumor tissues might promote a deeper understanding of cell signaling in complex clinical biospecimen. In this study, we differentially analyzed basal isoform phosphorylation in normal and tumor tissue of colorectal cancer (n= 30) and corresponding liver metastases (n= 30), as well as in breast cancer (n=26), and non-small cell lung cancer (n=29). Isoform and corresponding phosphorylation of selected key proteins from two EGF-receptor downstream pathways, i.e. Erk1/2, Mek1/2 and Akt were detected using the NanoPro™1000 technology. It has been postulated that oncogene addiction, i.e. hyper activation of oncogenic signaling pathways is a hallmark of cancer, therefore potentially restricted to tumor tissue. Today, little is known about the basal phosphorylation status of normal tissue and therapeutic consequences. In this study, we have shown that there are significant differences in the overall degree of phosphorylation between normal and tumor tissues. For example, normal liver tissue shows significant higher phosphorylation of Erk1/2 compared to liver metastases of colorectal cancer. Statistical analysis of data also revealed that the overall phosphorylation of Erk1/2, Mek1/2 and Akt significantly differed among individual patients, but not between tumor entities. Therefore, the in-depth analysis of specific isoform phosphorylation can reveal significant biological differences. Furthermore, the analysis might result in therapy relevant, predictive signatures independent of the mutation status. In summary, we found that high phosphorylation of signaling molecules is not restricted to tumor tissue and has to be taken in account when analyzing clinical biospecimen. The NanoPro TM1000 technology can be used to robustly screen a large cohort of patients, i.e. biopsies, to gain insights in phosphorylation patterns of normal and cancer tissue. Therein, the analysis of isoform phosphorylation potentially enables the selection of patients, who will most likely benefit from targeted treatment. Citation Format: Florian T. Unger, Jana Krueger, Janina Schaller, Rebecca Giese, Cordula Dede, Alexandra Samsen, Hartmut Juhl, Kerstin A. David. Differences in basal isoform phosphorylation of signaling proteins between normal and tumor tissue in different cancer types detected by the NanoPro™1000 technology. [abstract]. In: Proceedings of the 105th Annual Meeting of the American Association for Cancer Research; 2014 Apr 5-9; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2014;74(19 Suppl):Abstract nr 913. doi:10.1158/1538-7445.AM2014-913
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2014
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
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  • 10
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2015
    In:  Cancer Research Vol. 75, No. 15_Supplement ( 2015-08-01), p. 2062-2062
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 75, No. 15_Supplement ( 2015-08-01), p. 2062-2062
    Abstract: Research in personalized medicine in oncology and its implementation in the clinical situation is strongly affected by the quality of collected biospecimen, which strongly depends on the pre-analytical conditions in which they were acquired. Therefore, warm and cold ischemia times that tissues are exposed to during collection are of critical importance. Insufficient quality of such tissues may lead to spurious results and data misinterpretation resulting in biased stratification of patients. The present study was conducted to gain a better understanding of the effects of warm and cold ischemia on the molecular composition of tissue specimens and especially on critical clinical biomarkers whose expression and activity level inform targeted therapy evaluation in cancer. Normal and cancer tissue from patients undergoing CRC (n = 50) surgery were analyzed comparing samples taken by endoscopy with postsurgical samples fixed within 10, 20 and 45 minutes postsurgery. In addition, we collected normal liver tissue (n = 43) before and after 10 minutes of ischemia and compared those samples with normal and metastatic cancer tissue fixed at the same timepoints. Tissue samples were analyzed using a whole genome gene expression array as well as different technologies for protein expression and protein phosphorylation with an emphasis on the epidermal growth factor receptor (EGFR)-pathway. This study showed that surgery, vascular clamping and subsequent processing had a significant impact on the expression of genes and the phosphorylation status of proteins. The gene expression profiling showed a high variability between patients. Significant changes of expression in individual patients occurred in up to 690 genes in normal tissue and in up to 4,116 genes in primary cancer tissue comparing presurgery and ischemia time points postsurgery. Clinically highly relevant was the finding that the phosphorylation of EGFR-pathway proteins is affected by surgery and postsurgical tissue processing. For example, the expression level of EGFR changed more then 2-fold in cancer tissue of 30% of the patients. Furthermore, signaling protein phosphorylation in the corresponding downstream pathways was also affected. These observed changes were validated using the NanoPro1000 technology, in order to gain information on the level of distinct isoform phosphorylation. An understanding of tissue data variability in relation to processing techniques during and postsurgery is mandatory when testing surgical specimens in the context of clinical diagnostics, drug development, or identification of predictive biomarkers. To obtain reliable expression data, tissue processing for research and diagnostic purposes needs to be highly standardized. Alterations in molecular patterns due to ischemia, identified in this study have to be analyzed with caution in research and development programs. Citation Format: Florian T. Unger, Nicole Lange, Philipp Uhlig, Hartmut Juhl, Kerstin A. David. Pre-analytical conditions strongly influence molecular pattern in clinical biospecimen. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 2062. doi:10.1158/1538-7445.AM2015-2062
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2015
    detail.hit.zdb_id: 2036785-5
    detail.hit.zdb_id: 1432-1
    detail.hit.zdb_id: 410466-3
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