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  • 1
    In: European Journal of Cancer and Clinical Oncology, Elsevier BV, Vol. 27 ( 1991-1), p. S12-
    Type of Medium: Online Resource
    ISSN: 0277-5379
    Language: English
    Publisher: Elsevier BV
    Publication Date: 1991
    detail.hit.zdb_id: 2220742-9
    detail.hit.zdb_id: 283367-0
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  • 2
    In: Nature Genetics, Springer Science and Business Media LLC, Vol. 55, No. 6 ( 2023-06), p. 927-938
    Abstract: Compelling evidence suggests that human cognitive function is strongly influenced by genetics. Here, we conduct a large-scale exome study to examine whether rare protein-coding variants impact cognitive function in the adult population ( n  = 485,930). We identify eight genes ( ADGRB2 , KDM5B , GIGYF1 , ANKRD12 , SLC8A1 , RC3H2 , CACNA1A and BCAS3 ) that are associated with adult cognitive function through rare coding variants with large effects. Rare genetic architecture for cognitive function partially overlaps with that of neurodevelopmental disorders. In the case of KDM5B we show how the genetic dosage of one of these genes may determine the variability of cognitive, behavioral and molecular traits in mice and humans. We further provide evidence that rare and common variants overlap in association signals and contribute additively to cognitive function. Our study introduces the relevance of rare coding variants for cognitive function and unveils high-impact monogenic contributions to how cognitive function is distributed in the normal adult population.
    Type of Medium: Online Resource
    ISSN: 1061-4036 , 1546-1718
    RVK:
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2023
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    SSG: 12
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  • 3
    In: Blood, American Society of Hematology, Vol. 122, No. 21 ( 2013-11-15), p. 482-482
    Abstract: Adult acute myeloid leukemia (AML) exemplifies the challenges of modern cancer drug discovery and development in that molecularly targeted therapies are yet to be translated into clinical use. No effective second-line therapy exists once standard chemotherapy fails. While many genetic events have been linked with the onset and progression of AML, the fundamental disease mechanisms remain poorly understood. There is significant genomic and molecular heterogeneity among patients. Several targeted therapies have been investigated for improved second-line AML therapy but none has been approved for clinical use to date. It would be critically important to identify patient subgroups that would benefit from such therapies and to identify combinations of drugs that are likely to be effective. Methods To identify and optimize novel therapies for AML, we studied 28 samples from 18 AML patients with an individualized systems medicine (ISM) approach. The ISM platform includes functional profiling of AML patient cells ex vivo with drug sensitivity and resistance testing (DSRT), comprehensive molecular profiling as well as clinical background information. Data integration was done to identify disease- and patient-specific molecular vulnerabilities for translation in the clinic. The DSRT platform comprises 306 anti-cancer agents, each tested in a dose response series. We calculated differential drug sensitivity scores by comparing AML responses to those of control cells in order to distinguish cancer-specific drug effects. Next generation RNA- and exome-sequencing was used to identify fusion transcripts and mutations that link to drug sensitivities. Results Individual AML patient samples had a distinct drug sensitivity pattern, but unsupervised hierarchical clustering of the drug sensitivity profiles of the 28 AML patient samples identified 5 functional AML drug response subtypes. Each subtype was characterized by distinct combinations of sensitivities: Bcl-2 inhibitors (e.g. navitoclax; Group 1), JAK inhibitors (e.g. ruxolitinib) (Group 2) and MEK inhibitors (e.g. trametinib) (Groups 2 and 4), PI3K/mTOR inhibitors (e.g. temsirolimus; Groups 4 and 5), broad spectrum receptor tyrosine kinase inhibitors (e.g. dasatinib) (Groups 3, 4 and 5) and FLT3 inhibitors (e.g. quizartinib, sunitinib) (Group 5). Correlation of overall drug responses with genomic profiles revealed that RAS and FLT3 mutations were significantly linked with the drug response subgroups 4 and 5, respectively. Activating FLT3 mutations contributed to sensitivity to FLT3 inhibitors, as expected, but also to tyrosine kinase inhibitors not targeting FLT3, such as dasatinib. Hence, these data point to the potential synergistic combinatorial effects of FLT3 inhibitors with dasatinib for improved therapy outcome (Figure). Early clinical translational results based on compassionate use support this hypothesis. Therefore, by combinations of drugs we expect to see synergistic drug responses that can be translated into efficacious and safe therapies for relapsed AML cases in the clinic. Clinical application of DSRT results in the treatment of eight recurrent chemorefractory patients led to objective responses in three cases according to ELN criteria, whereas four of the remaining five patients had meaningful responses not meeting ELN criteria. After disease progression, AML patient cells showed ex vivo resistance to the drugs administered to the patients, as well as significant changes in clonal architecture during treatment response. Furthermore, we saw genomic alterations potentially explaining drug resistance, such as appearance of novel fusion genes. Summary The ISM approach represents an opportunity for improving therapies for cancer patients, one patient at the time. We show that the platform can be used to identify functional groups of AML linking to vulnerabilities to single targeted drugs and, importantly, unexpected drug combinations. This information can in turn be used for personalized medicine strategies and for creating hypotheses to be explored in systematic clinical trials, both for approved and investigational drugs. Disclosures: Off Label Use: Many of the compounds included in our DSRT platform are not indicated for AML therapy. Mustjoki:BMS: Honoraria, Research Funding; Novartis: Honoraria. Porkka:Novartis: Honoraria, Research Funding; BMS: Honoraria, Research Funding. Kallioniemi:Medisapiens: Membership on an entity’s Board of Directors or advisory committees; Roche: Research Funding.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2013
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  • 4
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 1992
    In:  Science Vol. 256, No. 5055 ( 1992-04-17), p. 373-377
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 256, No. 5055 ( 1992-04-17), p. 373-377
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 1992
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    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
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  • 5
    In: Blood, American Society of Hematology, Vol. 138, No. Supplement 1 ( 2021-11-05), p. 228-228
    Abstract: Background BCL-2 inhibitor venetoclax (Ven) in combination with azacitidine (Aza) has substantially improved overall response rates (ORR) and overall survival (OS) in newly diagnosed nonfit acute myeloid leukemia (AML). Nevertheless, 1/3 of patients (pts) do not respond to the treatment, and for relapsed/refractory (R/R) pts the ORR is 20‒50%. While certain genetic changes correlate with treatment outcome (e.g., IDH2, TP53), mutations do not precisely predict Ven-Aza response. Thus, novel approaches are needed to identify those who benefit from Ven-Aza, particularly in the R/R setting. Ex vivo drug sensitivity has been explored in small pilot studies to guide treatment in R/R AML. However, very few prospective clinical trials have analyzed the predictability of ex vivo drug sensitivity testing. It is also unknown whether different drug testing platforms (e.g., flow cytometry (FC) and luminescent cell viability assays) and culture conditions influence the predictive accuracy. Therefore, we designed a prospective trial to evaluate the ex vivo/in vivo correlation of drug sensitivity testing with the Ven-Aza treatment outcome in AML. Methods VenEx is an ongoing, multicenter, open-label phase II study by the Finnish AML Group (NCT04267081) that includes nonfit de novo, R/R, and secondary AML (sAML) pts. Here, we report the interim results from the first part of the trial (validation cohort), in which all patients received study treatment regardless of the ex vivo drug sensitivity testing results (n = 39). All pts received Aza (75 mg/m 2 on days 1‒7, 28-day cycle) and Ven (400 mg once daily, 28-day cycles, shortened in responding pts to 21 days). The primary endpoint was cumulative ORR (CR/CRi/MLFS) during the first three treatment cycles, and a key secondary endpoint was the correlation of ex vivo drug sensitivity with ORR and OS. For drug sensitivity testing, 20 ml of bone marrow (BM) was shipped to the central laboratory, and Ficoll-purified mononuclear cells (MNCs) were plated within 26 hours after sampling. The drug plates contained Ven, Ven + Aza, and other BCL-2 family inhibitors across a 10,000-fold concentration range. Ven sensitivity was measured in three cell culture conditions: 1. RPMI, 2. conditioned medium (CM, HS-5 cell line derived medium (Karjalainen et al., 2017), and 3. StemSpan SFEMII + 20 ng/ml of FLT3L + SCF + TPO (SPM). After 48 h of incubation with the drugs, cell viability was measured in parallel with CellTiter-Glo (CTG) and FC, as described by Kuusanmäki et al. (2020). Drug sensitivity score (DSS) derived from the area under the dose response curve calculations indicated efficacy (Yadav et al., 2014). Results In the validation cohort, 16 pts had de novo AML and 23 had sAML or R/R AML. The ORR for de novo AML was 88% (14/16) and for R/R or sAML 52% (12/23). Drug sensitivity testing was successful in 38/39 pts. The best correlation of responding and non-responding pts occurred when blast-specific Ven sensitivity was measured by FC in CM media (p & lt; 0.001, Figures A-B). When the ex vivo/in vivo correlation with CTG (BM bulk MNC sensitivity) was assessed, several pts who had achieved CR/CRi/MLFS during the first three cycles were resistant to Ven ex vivo (Figure A). Similarly, the SPM medium yielded false negative ex vivo responses in blast-specific FC measurement. Ex vivo testing of the Ven-Aza combination by FC did not increase the predictive accuracy over Ven alone (Figure A). Using a DSS threshold of 10.7 for blast-specific FC Ven sensitivity in CM, the test's sensitivity was 92%, its specificity was 75%, and its positive predictive value was 88% (Figure C). The median OS for patients who had DSS & lt; 10.7 (ex vivo resistant) was 3.5 months, and those with DSS & gt; 10.7 (ex vivo sensitive) have not reached the median OS (p & lt; 0.001, Figure D). Conclusions Ex vivo drug sensitivity testing was feasible for AML pts in a clinical trial context. Leukemic blast-specific ex vivo Ven sensitivity showed a high correlation with ORR, with a positive predictive value of 88%, and predicted longer OS. The interim results argue that ex vivo Ven sensitivity can be used as a predictive biomarker for Ven-Aza therapy. Notably, experimental conditions had considerable influence on the predictive value of ex vivo Ven sensitivity; thus, between-trial standardization is crucial. The ongoing VenEx trial will validate these findings in the second part of the trial (60 pts) where ex vivo Ven sensitivity guides therapy in pts with R/R or sAML. Figure 1 Figure 1. Disclosures Kuusanmäki: AbbVie: Research Funding. Heckman: Novartis: Research Funding; Orion Pharma: Research Funding; Celgene/BMS: Research Funding; Oncopeptides: Consultancy, Research Funding; Kronos Bio, Inc.: Research Funding. Ettala: Novartis: Membership on an entity's Board of Directors or advisory committees; Pfizer: Membership on an entity's Board of Directors or advisory committees; Amgen: Other: Conference expensens; Sanofi: Other: Conference expensens. Pyörälä: Pfizer: Honoraria; Novartis: Honoraria; AbbVie: Honoraria. Rimpiläinen: Astellas: Membership on an entity's Board of Directors or advisory committees; AbbVie: Membership on an entity's Board of Directors or advisory committees; Pfizer: Membership on an entity's Board of Directors or advisory committees. Siitonen: amgen: Honoraria; Novartis: Honoraria, Membership on an entity's Board of Directors or advisory committees; Brystol Myers Squibb: Consultancy; Janssen-Cilag: Consultancy, Membership on an entity's Board of Directors or advisory committees; abbvie: Membership on an entity's Board of Directors or advisory committees; Pfizer: Consultancy, Membership on an entity's Board of Directors or advisory committees; celgene: Membership on an entity's Board of Directors or advisory committees. Kontro: Astellas: Consultancy, Membership on an entity's Board of Directors or advisory committees; Jazz Pharmaceuticals: Membership on an entity's Board of Directors or advisory committees; AbbVie: Membership on an entity's Board of Directors or advisory committees, Research Funding.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2021
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    detail.hit.zdb_id: 80069-7
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  • 6
    In: Blood, American Society of Hematology, Vol. 140, No. Supplement 1 ( 2022-11-15), p. 2020-2022
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2022
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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  • 7
    In: Cancer Discovery, American Association for Cancer Research (AACR), Vol. 12, No. 2 ( 2022-02-01), p. 388-401
    Abstract: We generated ex vivo drug-response and multiomics profiling data for a prospective series of 252 samples from 186 patients with acute myeloid leukemia (AML). A functional precision medicine tumor board (FPMTB) integrated clinical, molecular, and functional data for application in clinical treatment decisions. Actionable drugs were found for 97% of patients with AML, and the recommendations were clinically implemented in 37 relapsed or refractory patients. We report a 59% objective response rate for the individually tailored therapies, including 13 complete responses, as well as bridging five patients with AML to allogeneic hematopoietic stem cell transplantation. Data integration across all cases enabled the identification of drug response biomarkers, such as the association of IL15 overexpression with resistance to FLT3 inhibitors. Integration of molecular profiling and large-scale drug response data across many patients will enable continuous improvement of the FPMTB recommendations, providing a paradigm for individualized implementation of functional precision cancer medicine. Significance: Oncogenomics data can guide clinical treatment decisions, but often such data are neither actionable nor predictive. Functional ex vivo drug testing contributes significant additional, clinically actionable therapeutic insights for individual patients with AML. Such data can be generated in four days, enabling rapid translation through FPMTB. See related commentary by Letai, p. 290. This article is highlighted in the In This Issue feature, p. 275
    Type of Medium: Online Resource
    ISSN: 2159-8274 , 2159-8290
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2022
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  • 8
    In: Haematologica, Ferrata Storti Foundation (Haematologica), Vol. 108, No. 7 ( 2022-12-15), p. 1768-1781
    Abstract: The BCL-2 inhibitor venetoclax has revolutionized the treatment of acute myeloid leukemia (AML) in patients not benefiting from intensive chemotherapy. Nevertheless, treatment failure remains a challenge, and predictive markers are needed, particularly for relapsed or refractory AML. Ex vivo drug sensitivity testing may correlate with outcomes, but its prospective predictive value remains unexplored. Here we report the results of the first stage of the prospective phase II VenEx trial evaluating the utility and predictiveness of venetoclax sensitivity testing using different cell culture conditions and cell viability assays in patients receiving venetoclax-azacitidine. Participants with de novo AML ineligible for intensive chemotherapy, relapsed or refractory AML, or secondary AML were included. The primary endpoint was the treatment response in participants showing ex vivo sensitivity and the key secondary endpoints were the correlation of sensitivity with responses and survival. Venetoclax sensitivity testing was successful in 38/39 participants. Experimental conditions significantly influenced the predictive accuracy. Blast-specific venetoclax sensitivity measured in conditioned medium most accurately correlated with treatment outcomes; 88% of sensitive participants achieved a treatment response. The median survival was significantly longer for participants who were ex vivo-sensitive to venetoclax (14.6 months for venetoclax-sensitive patients vs. 3.5 for venetoclax-insensitive patients, P 〈 0.001). This analysis illustrates the feasibility of integrating drug-response profiling into clinical practice and demonstrates excellent predictivity. This trial is registered with ClinicalTrials.gov identifier: NCT04267081.
    Type of Medium: Online Resource
    ISSN: 1592-8721 , 0390-6078
    Language: Unknown
    Publisher: Ferrata Storti Foundation (Haematologica)
    Publication Date: 2022
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    detail.hit.zdb_id: 2805244-4
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  • 9
    Online Resource
    Online Resource
    Elsevier BV ; 1999
    In:  Current Biology Vol. 9, No. 18 ( 1999-09), p. 991-998
    In: Current Biology, Elsevier BV, Vol. 9, No. 18 ( 1999-09), p. 991-998
    Type of Medium: Online Resource
    ISSN: 0960-9822
    Language: English
    Publisher: Elsevier BV
    Publication Date: 1999
    detail.hit.zdb_id: 2019214-9
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    Elsevier BV ; 1993
    In:  Clinica Chimica Acta Vol. 217, No. 1 ( 1993-7), p. 57-62
    In: Clinica Chimica Acta, Elsevier BV, Vol. 217, No. 1 ( 1993-7), p. 57-62
    Type of Medium: Online Resource
    ISSN: 0009-8981
    Language: English
    Publisher: Elsevier BV
    Publication Date: 1993
    detail.hit.zdb_id: 1499920-1
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