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Figure 8 from: Long S, Liu L, Pi Y, Wu Y, Lin Y, Zhang X, Long Q, Kang Y, Kang J, Wijayawardene NN, Wang F, Shen X, Li Q (2021) New contributions to Diatrypaceae from karst areas in China. MycoKeys 83: 1-37. https://doi.org/10.3897/mycokeys.83.68926

Long, Sihan ; Liu, Lili ; Pi, Yinhui ; [et al.]

Pensoft Publishers ; 2021

In: MycoKeys Vol. 83 ( 2021-08-20), p. 1-37

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In: MycoKeys, Pensoft Publishers, Vol. 83 ( 2021-08-20), p. 1-37

Abstract: In this study, fungal specimens of the family Diatrypaceae were collected from karst areas in Guizhou, Hainan and Yunnan Provinces, China. Morpho-molecular analyses confirmed that these new collections comprise a new genus Pseudodiatrype , three new species ( Diatrype lancangensis , Diatrypella pseudooregonensis and Eutypa cerasi ), a new combination ( Diatrypella oregonensis ), two new records ( Allodiatrype thailandica and Diatrypella vulgaris ) from China and two other known species ( Neoeutypella baoshanensis and Paraeutypella citricola ). The new taxa are introduced, based on multi-gene phylogenetic analyses (ITS, β-tubulin), as well as morphological analyses. The new genus Pseudodiatrype is characterised by its wart-like stromata with 5–20 ascomata immersed in one stroma and the endostroma composed of thin black outer and inner layers of large white cells with thin, powdery, yellowish cells. These characteristics separate this genus from two similar genera Allodiatrype and Diatrype . Based on morphological as well as phylogenetic analyses, Diatrype lancangensis is introduced as a new species of Diatrype . The stromata of Diatrype lancangensis are similar to those of D. subundulata and D. undulate , but the ascospores are larger. Based on phylogenetic analyses, Diatrype oregonensis is transferred to the genus Diatrypella as Diatrypella oregonensis while Diatrypella pseudooregonensis is introduced as a new species of Diatrypella with 8 spores in an ascus. In addition, multi-gene phylogenetic analyses show that Eutypa cerasi is closely related to E. lata , but the ascomata and asci of Eutypa cerasi are smaller. The polyphyletic nature of some genera of Diatrypaceae has led to confusion in the classification of the family, thus we discuss whether the number of ascospores per asci can still be used as a basis for classification.

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.83.68926

DOI: 10.3897/mycokeys.83.68926.figure1

DOI: 10.3897/mycokeys.83.68926.figure9

DOI: 10.3897/mycokeys.83.68926.figure2

DOI: 10.3897/mycokeys.83.68926.figure3

DOI: 10.3897/mycokeys.83.68926.figure4

DOI: 10.3897/mycokeys.83.68926.figure5

DOI: 10.3897/mycokeys.83.68926.figure6

DOI: 10.3897/mycokeys.83.68926.figure7

DOI: 10.3897/mycokeys.83.68926.figure8

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2021

detail.hit.zdb_id: 2630648-7

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Figure 8 from: Liu W-B, Wang Y, Zhao K-Z, Wang C-Y, Zhang J-Y, Yan C-C, Lin X-L (2023) New species, a new combination, and DNA barcodes of Parachironomus Lenz, 1921 (Diptera, Chironomidae). ZooKeys 1153: 121-140. https://doi.org/10.3897/zookeys.1153.98542

Liu, Wen-Bin ; Wang, Ying ; Zhao, Kang-Zhu ; [et al.]

Pensoft Publishers ; 2023

In: ZooKeys Vol. 1153 ( 2023-03-16), p. 121-140

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In: ZooKeys, Pensoft Publishers, Vol. 1153 ( 2023-03-16), p. 121-140

Abstract: The genus Parachironomus has a cosmopolitan distribution including 85 valid described species worldwide. Species records and studies of the genus in the Tibetan Plateau are scarce. In this study, the genus Parachironomus from China is revised and two new species, Parachironomus wangi Liu & Lin, sp. nov. and Parachironomus nankaiensis Liu & Lin, sp. nov. , are described based on adult morphology and molecular data. Paracladopelma demissum Yan, Wang & Bu is placed in the genus Parachironomus as a new combination. A neighbor-joining tree was reconstructed based on all known Parachironomus COI DNA barcodes. A key to adult males of the genus Parachironomus from China is also provided.

Type of Medium: Online Resource

ISSN: 1313-2970 , 1313-2989

URL: Article

DOI: 10.3897/zookeys.1153.98542

DOI: 10.3897/zookeys.1153.98542.figure1

DOI: 10.3897/zookeys.1153.98542.figure2

DOI: 10.3897/zookeys.1153.98542.figure3

DOI: 10.3897/zookeys.1153.98542.figure4

DOI: 10.3897/zookeys.1153.98542.figure5

DOI: 10.3897/zookeys.1153.98542.figure6

DOI: 10.3897/zookeys.1153.98542.figure7

DOI: 10.3897/zookeys.1153.98542.figure8

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2023

detail.hit.zdb_id: 2445640-8

SSG: 12

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Tuesday, 28 August 2012

Ogawa, H. ; Koyanagi, R. ; Kawada-Watanabe, E. ; [et al.]

Oxford University Press (OUP) ; 2012

In: European Heart Journal Vol. 33, No. suppl 1 ( 2012-08-02), p. 655-939

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In: European Heart Journal, Oxford University Press (OUP), Vol. 33, No. suppl 1 ( 2012-08-02), p. 655-939

Type of Medium: Online Resource

ISSN: 0195-668X , 1522-9645

URL: Article

DOI: 10.1093/eurheartj/ehs283

Language: English

Publisher: Oxford University Press (OUP)

Publication Date: 2012

detail.hit.zdb_id: 2001908-7

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Figure 8 from: Deng L-S, Kang R, Zeng N-K, Yu W-J, Chang C, Xu F, Deng W-Q, Qi L-L, Zhou Y-L, Fan Y-G (2021) Two new Inosperma (Inocybaceae) species with unexpected muscarine contents from tropical China. MycoKeys 85: 87-108. https://doi.org/10.3897/mycokeys.85.71957

Deng, Lun-Sha ; Kang, Rui ; Zeng, Nian-Kai ; [et al.]

Pensoft Publishers ; 2021

In: MycoKeys Vol. 85 ( 2021-12-15), p. 87-108

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In: MycoKeys, Pensoft Publishers, Vol. 85 ( 2021-12-15), p. 87-108

Abstract: An accurate identification of poisonous mushrooms and the confirmation of the toxins involved are both of great importance in the treatment of mushroom poisoning incidents. In recent years, cases of mushroom poisoning by Inosperma spp. have been repeatedly reported from tropical Asia. It is urgent to know the real species diversity of Inosperma in this region. In the present study, we proposed two new Inosperma species from tropical Asia, namely I. muscarium and I. hainanense . They were described based on morphology and multilocus phylogeny. Detailed descriptions, color photographs and the discussion with other closely related species of the two new taxa were provided. In addition, a comprehensive muscarine determination of these two new species using ultrahigh performance liquid chromatography tandem mass spectrometry (UPLC-MS/MS) approach has been performed. Results showed that these two species were muscarine positive, with a content of 16.03 ± 1.23 g/kg in I. muscarium and a content of 11.87 ± 3.02 g/kg in I. hainanense , much higher than the known species I. virosum . Recovery of muscarine ranged from 93.45% to 97.25%, and the average recovery is 95.56%.

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.85.71957

DOI: 10.3897/mycokeys.85.71957.figure1

DOI: 10.3897/mycokeys.85.71957.figure2

DOI: 10.3897/mycokeys.85.71957.figure3

DOI: 10.3897/mycokeys.85.71957.figure4

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DOI: 10.3897/mycokeys.85.71957.figure6

DOI: 10.3897/mycokeys.85.71957.figure7

DOI: 10.3897/mycokeys.85.71957.figure8

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2021

detail.hit.zdb_id: 2630648-7

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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022

CNCB-NGDC Members and Partners ; Xue, Yongbiao ; Bao, Yiming ; [et al.]

Oxford University Press (OUP) ; 2022

In: Nucleic Acids Research Vol. 50, No. D1 ( 2022-01-07), p. D27-D38

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In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 50, No. D1 ( 2022-01-07), p. D27-D38

Abstract: The National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB), provides a family of database resources to support global research in both academia and industry. With the explosively accumulated multi-omics data at ever-faster rates, CNCB-NGDC is constantly scaling up and updating its core database resources through big data archive, curation, integration and analysis. In the past year, efforts have been made to synthesize the growing data and knowledge, particularly in single-cell omics and precision medicine research, and a series of resources have been newly developed, updated and enhanced. Moreover, CNCB-NGDC has continued to daily update SARS-CoV-2 genome sequences, variants, haplotypes and literature. Particularly, OpenLB, an open library of bioscience, has been established by providing easy and open access to a substantial number of abstract texts from PubMed, bioRxiv and medRxiv. In addition, Database Commons is significantly updated by cataloguing a full list of global databases, and BLAST tools are newly deployed to provide online sequence search services. All these resources along with their services are publicly accessible at https://ngdc.cncb.ac.cn.

Type of Medium: Online Resource

ISSN: 0305-1048 , 1362-4962

URL: Article

DOI: 10.1093/nar/gkab951

RVK:

WA 15000

Language: English

Publisher: Oxford University Press (OUP)

Publication Date: 2022

detail.hit.zdb_id: 1472175-2

SSG: 12

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Supplementary Material 2 from: Kang Z, Xu Y, Wang G, Yang D, Zhang X (2023) First mitochondrial genomes of the crane fly tribe Elephantomyiini (Diptera, Tipuloidea, Limoniidae): comparative analysis and phylogenetic implications. Arthropod Systematics & Phylogeny 81: 731-746. https://doi.org/10.3897/asp.81.e97946

Kang, Zehui ; Xu, Yuanyuan ; Wang, Guoquan ; [et al.]

Pensoft Publishers ; 2023

In: Arthropod Systematics & Phylogeny Vol. 81 ( 2023-09-08), p. 731-746

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In: Arthropod Systematics & Phylogeny, Pensoft Publishers, Vol. 81 ( 2023-09-08), p. 731-746

Abstract: Limoniidae, the most speciose family in the superfamily Tipuloidea, consists of four subfamilies and more than 11,000 species. However, mitochondrial (mt) genome sequences, which have been widely used for phylogenetic study, are available for only 11 species across three subfamilies. Thus, a larger variety of mt genome sequences in Limoniidae are required to improve our understanding of tipuloid phylogeny and genomic evolution. Here we present mt genomes of Elephantomyia (Elephantomyia) inulta Alexander, 1938 and Helius (Helius) pluto Alexander, 1932, representing the first mt genomes of the tribe Elephantomyiini (Limoniidae). The two mt genomes are typical circular DNA molecules and show similar gene order, nucleotide composition and codon usage. Standard ATN start and TAR stop codons are present in most protein-coding genes. All transfer RNA (tRNA) genes exhibited the cloverleaf secondary structure typical for metazoans except in tRNA Ser(AGN) , which lacks the dihydrouridine arm. Phylogenetic analyses were performed based on four nucleotide matrixes for the currently sequenced species of Tipuloidea using Bayesian inference and maximum likelihood methods. Four-cluster likelihood mapping was used to study incongruent signals between different topologies. Pediciidae is supported as the earliest lineage in Tipuloidea, and the sister-group relationship between Cylindrotomidae and Tipulidae is also supported, but the monophyly of Limoniidae is not supported. Our study also supports the monophyly of Elephantomyiini ( Elephantomyia + Helius ), as one of origins of flower-visiting in Limoniidae. Although Elephantomyiini is sister to Limoniinae + Epiphragma (Limnophilinae) in our study, a more precise understanding of its phylogenetic position in Tipuloidea will require additional studies that include a broader species sample.

Type of Medium: Online Resource

ISSN: 1864-8312 , 1863-7221

URL: Article

DOI: 10.3897/asp.81.e97946

DOI: 10.3897/asp.81.e97946.figure1

DOI: 10.3897/asp.81.e97946.figure2

DOI: 10.3897/asp.81.e97946.figure3

DOI: 10.3897/asp.81.e97946.figure4

DOI: 10.3897/asp.81.e97946.figure5

DOI: 10.3897/asp.81.e97946.suppl1

DOI: 10.3897/asp.81.e97946.suppl2

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2023

detail.hit.zdb_id: 2299371-X

SSG: 12

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Supplementary material 1 from: Li J, Li L, Xing Y, Wang L, Zhu Y, Kang B (2023) Predicted increased distribution of non-native red drum in China’s coastal waters under climate change. Aquatic Invasions 18(3): 385-400. https://doi.org/10.3391/ai.2023.18.3.109001

Li, Jintao ; Li, Linjie ; Xing, Yankuo ; [et al.]

Regional Euro-Asian Biological Invasions Centre Oy (REABIC) ; 2023

In: Aquatic Invasions Vol. 18, No. 3 ( 2023-09-13), p. 385-400

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In: Aquatic Invasions, Regional Euro-Asian Biological Invasions Centre Oy (REABIC), Vol. 18, No. 3 ( 2023-09-13), p. 385-400

Abstract: Climate change and species invasions are among the most serious threats to global biodiversity, and climate change will further greatly alter the distribution of invasive species. The red drum Sciaenops ocellatus (Linnaeus, 1766) has established non-native populations in many parts of the world, leading to negative effects on local ecosystems. In this study, based on 455 global occurrence records (38 of which were in Chinese waters) and 5 biologically relevant variables (average ocean bottom temperature, ocean bottom average salinity, ocean bottom average flow rate, depth, and distance from shore), a weighted ensemble model was developed to predict the current potential distribution of red drum in Chinese waters and the future distribution under two climate change scenarios (RCP 26 and RCP 85). Based on the True Skill Statistics (TSS) and the Area Under Curve (AUC), the ensemble model showed more accurate predictive performance than any single model. Among the five environmental variables, the average temperature was the most important environmental variable influencing the distribution of red drum. Ensemble model prediction showed that the current suitable habitat of red drum was mainly concentrated on the coast of Chinese mainland, around Hainan Island, and the western coastal waters of Taiwan Province (17~41°N). Projections in the 2050s and 2100s suggested that red drum would expand northwards under both future climate scenarios (RCP 26 and RCP 85), especially in the western part of the Yellow Sea and along the Bohai Sea coast, which should be involved in the management strategies to maintain ecosystem structure and function.

Type of Medium: Online Resource

ISSN: 1818-5487 , 1798-6540

URL: Article

DOI: 10.3391/ai.2023.18.3.109001

DOI: 10.3391/ai.2023.18.3.109001.figure1

DOI: 10.3391/ai.2023.18.3.109001.figure2

DOI: 10.3391/ai.2023.18.3.109001.figure3

DOI: 10.3391/ai.2023.18.3.109001.figure4

DOI: 10.3391/ai.2023.18.3.109001.figure5

DOI: 10.3391/ai.2023.18.3.109001.figure6

DOI: 10.3391/ai.2023.18.3.109001.suppl1

Language: Unknown

Publisher: Regional Euro-Asian Biological Invasions Centre Oy (REABIC)

Publication Date: 2023

detail.hit.zdb_id: 2381496-2

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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021

CNCB-NGDC Members and Partners ; Xue, Yongbiao ; Bao, Yiming ; [et al.]

Oxford University Press (OUP) ; 2021

In: Nucleic Acids Research Vol. 49, No. D1 ( 2021-01-08), p. D18-D28

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In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 49, No. D1 ( 2021-01-08), p. D18-D28

Abstract: The National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB), provides a suite of database resources to support worldwide research activities in both academia and industry. With the explosive growth of multi-omics data, CNCB-NGDC is continually expanding, updating and enriching its core database resources through big data deposition, integration and translation. In the past year, considerable efforts have been devoted to 2019nCoVR, a newly established resource providing a global landscape of SARS-CoV-2 genomic sequences, variants, and haplotypes, as well as Aging Atlas, BrainBase, GTDB (Glycosyltransferases Database), LncExpDB, and TransCirc (Translation potential for circular RNAs). Meanwhile, a series of resources have been updated and improved, including BioProject, BioSample, GWH (Genome Warehouse), GVM (Genome Variation Map), GEN (Gene Expression Nebulas) as well as several biodiversity and plant resources. Particularly, BIG Search, a scalable, one-stop, cross-database search engine, has been significantly updated by providing easy access to a large number of internal and external biological resources from CNCB-NGDC, our partners, EBI and NCBI. All of these resources along with their services are publicly accessible at https://bigd.big.ac.cn.

Type of Medium: Online Resource

ISSN: 0305-1048 , 1362-4962

URL: Article

DOI: 10.1093/nar/gkaa1022

RVK:

WA 15000

Language: English

Publisher: Oxford University Press (OUP)

Publication Date: 2021

detail.hit.zdb_id: 1472175-2

SSG: 12

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Guidelines for the use and interpretation of assays for monitoring autophagy

Klionsky, Daniel J. ; Abdalla, Fabio C. ; Abeliovich, Hagai ; [et al.]

Informa UK Limited ; 2012

In: Autophagy Vol. 8, No. 4 ( 2012-04), p. 445-544

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In: Autophagy, Informa UK Limited, Vol. 8, No. 4 ( 2012-04), p. 445-544

Type of Medium: Online Resource

ISSN: 1554-8627 , 1554-8635

URL: Article

DOI: 10.4161/auto.19496

Language: English

Publisher: Informa UK Limited

Publication Date: 2012

detail.hit.zdb_id: 2262043-6

SSG: 12

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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023

CNCB-NGDC Members and Partners ; Xue, Yongbiao ; Bao, Yiming ; [et al.]

Oxford University Press (OUP) ; 2023

In: Nucleic Acids Research Vol. 51, No. D1 ( 2023-01-06), p. D18-D28

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In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 51, No. D1 ( 2023-01-06), p. D18-D28

Abstract: The National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB), provides a family of database resources to support global academic and industrial communities. With the explosive accumulation of multi-omics data generated at an unprecedented rate, CNCB-NGDC constantly expands and updates core database resources by big data archive, integrative analysis and value-added curation. In the past year, efforts have been devoted to integrating multiple omics data, synthesizing the growing knowledge, developing new resources and upgrading a set of major resources. Particularly, several database resources are newly developed for infectious diseases and microbiology (MPoxVR, KGCoV, ProPan), cancer-trait association (ASCancer Atlas, TWAS Atlas, Brain Catalog, CCAS) as well as tropical plants (TCOD). Importantly, given the global health threat caused by monkeypox virus and SARS-CoV-2, CNCB-NGDC has newly constructed the monkeypox virus resource, along with frequent updates of SARS-CoV-2 genome sequences, variants as well as haplotypes. All the resources and services are publicly accessible at https://ngdc.cncb.ac.cn.

Type of Medium: Online Resource

ISSN: 0305-1048 , 1362-4962

URL: Article

DOI: 10.1093/nar/gkac1073

RVK:

WA 15000

Language: English

Publisher: Oxford University Press (OUP)

Publication Date: 2023

detail.hit.zdb_id: 1472175-2

SSG: 12

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