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Supplementary material 4 from: Wang Y, Wang Z-Q, Thanarut C, Dao V-M, Wang Y-B, Yu H (2023) Phylogeny and species delimitations in the economically, medically, and ecologically important genus Samsoniella (Cordycipitaceae, Hypocreales). MycoKeys 99: 227-250. https://doi.org/10.3897/mycokeys.99.106474

Wang, Yao ; Wang, Zhi-Qin ; Thanarut, Chinnapan ; [et al.]

Pensoft Publishers ; 2023

In: MycoKeys Vol. 99 ( 2023-10-03), p. 227-250

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In: MycoKeys, Pensoft Publishers, Vol. 99 ( 2023-10-03), p. 227-250

Abstract: Samsoniella is a ubiquitous genus of cosmopolitan arthropod-pathogenic fungi in the family Cordycipitaceae. The fungi have economic, medicinal, and ecological importance. Prior taxonomic studies of these fungi relied predominantly on phylogenetic inferences from five loci, namely, the nuclear ribosomal small and large subunits (nr SSU and nr LSU), the 3’ portion of translation elongation factor 1 alpha (3P_ TEF ), and RNA polymerase II subunits 1 and 2 ( RPB1 and RPB2 ). Despite many new species being described, not all of the recognized species inside this group formed well-supported clades. Thus, the search for new markers appropriate for molecular phylogenetic analysis of Samsoniella remains a challenging problem. In our study, we selected the internal transcribed spacer regions of the rDNA (ITS rDNA) and seven gene regions, namely, 3P_ TEF , the 5’ portion of translation elongation factor 1 alpha (5P_ TEF ), RPB1 , RPB2 , γ-actin ( ACT ), β-tubulin ( TUB ), and a gene encoding a minichromosome maintenance protein ( MCM7 ), as candidate markers for species identification. Genetic divergence comparisons showed that the ITS, RPB2 , ACT , and TUB sequences provided little valuable information with which to separate Samsoniella spp. In contrast, sequence data for 3P_ TEF , 5P_ TEF , RPB1 , and MCM7 provided good resolution of Samsoniella species. The phylogenetic tree inferred from combined data (5P_ TEF + 3P_ TEF + RPB1 + MCM7 ) showed well-supported clades for Samsoniella and allowed for the delimitation of 26 species in this genus. The other two species ( S. formicae and S. lepidopterorum ) were not evaluated, as they had abundant missing data.

Type of Medium: Online Resource

ISSN: 1314-4049 , 1314-4057

URL: Article

DOI: 10.3897/mycokeys.99.106474

DOI: 10.3897/mycokeys.99.106474.figure1

DOI: 10.3897/mycokeys.99.106474.figure2

DOI: 10.3897/mycokeys.99.106474.figure3

DOI: 10.3897/mycokeys.99.106474.figure4

DOI: 10.3897/mycokeys.99.106474.figure5

DOI: 10.3897/mycokeys.99.106474.figure6

DOI: 10.3897/mycokeys.99.106474.suppl1

DOI: 10.3897/mycokeys.99.106474.suppl2

DOI: 10.3897/mycokeys.99.106474.suppl3

DOI: 10.3897/mycokeys.99.106474.suppl4

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2023

detail.hit.zdb_id: 2630648-7

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Figure 17 from: Pang Y, Su C-Y, Zhu J-Q, Yang X-H, Zhong J-L, Zhu D-H, Liu Z (2022) A new species of Andricus Hartig, 1840 (Hymenoptera, Cynipidae) from China, with references to DNA taxonomy and Wolbachia infection. ZooKeys 1134: 52-73. https://doi.org/10.3897/zookeys.1134.89267

Pang, Yin ; Su, Cheng-Yuan ; Zhu, Jun-Qiao ; [et al.]

Pensoft Publishers ; 2022

In: ZooKeys Vol. 1134 ( 2022-12-07), p. 52-73

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In: ZooKeys, Pensoft Publishers, Vol. 1134 ( 2022-12-07), p. 52-73

Abstract: In the present paper, a new species of cynipid gall wasp, Andricus elodeoides Liu & Pang, is described from several provinces in southern China. The new species is closely related to the recently redescribed A. mairei (Kieffer, 1906). In addition to differences in adult and gall morphology, the new species is also readily separated by COI sequences, with a 6.2–8.9% genetic distance between populations of the new species and those of A. mairei . A contrasting difference in sex ratios was also observed between the two species, with A. elodeoides extremely female-biased (95.5–97.8% female) while A. mairei male-biased to more balanced (5.4–43.5% female). PCR screening for Wolbachia infection further revealed contrasting infection rates between populations of A. elodeoides and A. mairei : the Wolbachia infection rate was 0% in A. elodeoides and 100% in A. mairei . Cytoplasmic incompatibility induced by Wolbachia is proposed as a potential mechanism of speciation of the sympatric A. elodeoides and A. mairei .

Type of Medium: Online Resource

ISSN: 1313-2970 , 1313-2989

URL: Article

DOI: 10.3897/zookeys.1134.89267

DOI: 10.3897/zookeys.1134.89267.figures1-6

DOI: 10.3897/zookeys.1134.89267.figures7-13

DOI: 10.3897/zookeys.1134.89267.figures14-15

DOI: 10.3897/zookeys.1134.89267.figure16

DOI: 10.3897/zookeys.1134.89267.figure17

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2022

detail.hit.zdb_id: 2445640-8

SSG: 12

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Figure 21 from: Pang Y, Liu Z, Su C-Y, Zhu D-H (2020) A new species of Periclistus Foerster, 1869 from China and review of the tribe Diastrophini (Hymenoptera, Cynipoidea, Cynipidae). ZooKeys 964: 109-126. https://doi.org/10.3897/zookeys.964.47441

Pang, Yin ; Liu, Zhiwei ; Su, Cheng-Yuan ; [et al.]

Pensoft Publishers ; 2020

In: ZooKeys Vol. 964 ( 2020-08-27), p. 109-126

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In: ZooKeys, Pensoft Publishers, Vol. 964 ( 2020-08-27), p. 109-126

Abstract: A new species of cynipid gall wasps, Periclistus orientalis Pang, Liu & amp; Zhu, sp. nov. , is herein described from Hunan, China in the tribe Diastrophini (Hymenoptera: Cynipoidea: Cynipidae). The phylogenetic relationship between Periclistus and all the other Diastrophini genera, except the recently described Xestophanopsis Pujade-Villar et al., 2019, was analyzed using a fragment of the mitochondrial COI gene and a fragment of the nuclear 28S gene. A taxonomic key to the known genera of Diastrophini and an updated taxonomic key to the known Eastern Palearctic species of Periclistus were provided. In addition, an updated checklist of the known species of the genus from the world is given.

Type of Medium: Online Resource

ISSN: 1313-2970 , 1313-2989

URL: Article

DOI: 10.3897/zookeys.964.47441

DOI: 10.3897/zookeys.964.47441.figures1-6

DOI: 10.3897/zookeys.964.47441.figures7-11

DOI: 10.3897/zookeys.964.47441.figures12-19

DOI: 10.3897/zookeys.964.47441.figure20

DOI: 10.3897/zookeys.964.47441.figure21

Language: Unknown

Publisher: Pensoft Publishers

Publication Date: 2020

detail.hit.zdb_id: 2445640-8

SSG: 12

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Polygenic risk modeling for prediction of epithelial ovarian cancer risk

Dareng, Eileen O. ; Tyrer, Jonathan P. ; Barnes, Daniel R. ; [et al.]

Springer Science and Business Media LLC ; 2022

In: European Journal of Human Genetics Vol. 30, No. 3 ( 2022-03), p. 349-362

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In: European Journal of Human Genetics, Springer Science and Business Media LLC, Vol. 30, No. 3 ( 2022-03), p. 349-362

Abstract: Polygenic risk scores (PRS) for epithelial ovarian cancer (EOC) have the potential to improve risk stratification. Joint estimation of Single Nucleotide Polymorphism (SNP) effects in models could improve predictive performance over standard approaches of PRS construction. Here, we implemented computationally efficient, penalized, logistic regression models (lasso, elastic net, stepwise) to individual level genotype data and a Bayesian framework with continuous shrinkage, “select and shrink for summary statistics” (S4), to summary level data for epithelial non-mucinous ovarian cancer risk prediction. We developed the models in a dataset consisting of 23,564 non-mucinous EOC cases and 40,138 controls participating in the Ovarian Cancer Association Consortium (OCAC) and validated the best models in three populations of different ancestries: prospective data from 198,101 women of European ancestries; 7,669 women of East Asian ancestries; 1,072 women of African ancestries, and in 18,915 BRCA1 and 12,337 BRCA2 pathogenic variant carriers of European ancestries. In the external validation data, the model with the strongest association for non-mucinous EOC risk derived from the OCAC model development data was the S4 model (27,240 SNPs) with odds ratios (OR) of 1.38 (95% CI: 1.28–1.48, AUC: 0.588) per unit standard deviation, in women of European ancestries; 1.14 (95% CI: 1.08–1.19, AUC: 0.538) in women of East Asian ancestries; 1.38 (95% CI: 1.21–1.58, AUC: 0.593) in women of African ancestries; hazard ratios of 1.36 (95% CI: 1.29–1.43, AUC: 0.592) in BRCA1 pathogenic variant carriers and 1.49 (95% CI: 1.35–1.64, AUC: 0.624) in BRCA2 pathogenic variant carriers. Incorporation of the S4 PRS in risk prediction models for ovarian cancer may have clinical utility in ovarian cancer prevention programs.

Type of Medium: Online Resource

ISSN: 1018-4813 , 1476-5438

URL: Article

DOI: 10.1038/s41431-021-00987-7

RVK:

XA 10000

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2022

detail.hit.zdb_id: 2005160-8

SSG: 12

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Correction: Polygenic risk modeling for prediction of epithelial ovarian cancer risk

Dareng, Eileen O. ; Tyrer, Jonathan P. ; Barnes, Daniel R. ; [et al.]

Springer Science and Business Media LLC ; 2022

In: European Journal of Human Genetics Vol. 30, No. 5 ( 2022-05), p. 630-631

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In: European Journal of Human Genetics, Springer Science and Business Media LLC, Vol. 30, No. 5 ( 2022-05), p. 630-631

Type of Medium: Online Resource

ISSN: 1018-4813 , 1476-5438

URL: Article

DOI: 10.1038/s41431-022-01085-y

RVK:

XA 10000

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2022

detail.hit.zdb_id: 2005160-8

SSG: 12

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The third Intensive Care Bundle with Blood Pressure Reduction in Acute Cerebral Haemorrhage Trial (INTERACT3): an international, stepped wedge cluster randomised controlled trial

Ma, Lu ; Hu, Xin ; Song, Lili ; [et al.]

Elsevier BV ; 2023

In: The Lancet Vol. 402, No. 10395 ( 2023-07), p. 27-40

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In: The Lancet, Elsevier BV, Vol. 402, No. 10395 ( 2023-07), p. 27-40

Type of Medium: Online Resource

ISSN: 0140-6736

URL: Article

DOI: 10.1016/S0140-6736(23)00806-1

RVK:

XA 10000

Language: English

Publisher: Elsevier BV

Publication Date: 2023

detail.hit.zdb_id: 2067452-1

detail.hit.zdb_id: 3306-6

detail.hit.zdb_id: 1476593-7

SSG: 5,21

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Guidelines for the use and interpretation of assays for monitoring autophagy

Klionsky, Daniel J. ; Abdalla, Fabio C. ; Abeliovich, Hagai ; [et al.]

Informa UK Limited ; 2012

In: Autophagy Vol. 8, No. 4 ( 2012-04), p. 445-544

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In: Autophagy, Informa UK Limited, Vol. 8, No. 4 ( 2012-04), p. 445-544

Type of Medium: Online Resource

ISSN: 1554-8627 , 1554-8635

URL: Article

DOI: 10.4161/auto.19496

Language: English

Publisher: Informa UK Limited

Publication Date: 2012

detail.hit.zdb_id: 2262043-6

SSG: 12

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The Establishment of China Bronchiectasis Registry and Research Collaboration (BE-China): Protocol of a prospective multicenter observational study

Gao, Yong-Hua ; Lu, Hai-Wen ; Mao, Bei ; [et al.]

Springer Science and Business Media LLC ; 2022

In: Respiratory Research Vol. 23, No. 1 ( 2022-12-03)

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In: Respiratory Research, Springer Science and Business Media LLC, Vol. 23, No. 1 ( 2022-12-03)

Abstract: Bronchiectasis is a highly heterogeneous chronic airway disease with marked geographic and ethnic variations. Most influential cohort studies to date have been performed in Europe and USA, which serve as the examples for developing a cohort study in China where there is a high burden of bronchiectasis. The Establishment of China Bronchiectasis Registry and Research Collaboration (BE-China) is designed to: (1) describe the clinical characteristics and natural history of bronchiectasis in China and identify the differences of bronchiectasis between the western countries and China; (2) identify the risk factors associated with disease progression in Chinese population; (3) elucidate the phenotype and endotype of bronchiectasis by integrating the genome, microbiome, proteome, and transcriptome with detailed clinical data; (4) facilitate large randomized controlled trials in China. Methods The BE-China is an ongoing prospective, longitudinal, multi-center, observational cohort study aiming to recruit a minimum of 10,000 patients, which was initiated in January 2020 in China. Comprehensive data, including medical history, aetiological testing, lung function, microbiological profiles, radiological scores, comorbidities, mental status, and quality of life (QoL), will be collected at baseline. Patients will be followed up annually for up to 10 years to record longitudinal data on outcomes, treatment patterns and QoL. Biospecimens, if possible, will be collected and stored at − 80 °C for further research. Up to October 2021, the BE-China has enrolled 3758 patients, and collected 666 blood samples and 196 sputum samples from 91 medical centers. The study protocol has been approved by the Shanghai Pulmonary Hospital ethics committee, and all collaborating centers have received approvals from their local ethics committee. All patients will be required to provide written informed consent to their participation. Conclusions Findings of the BE-China will be crucial to reveal the clinical characteristics and natural history of bronchiectasis and facilitate evidence-based clinical practice in China. Trial registration Registration Number in ClinicalTrials.gov: NCT03643653

Type of Medium: Online Resource

ISSN: 1465-993X

URL: Article

DOI: 10.1186/s12931-022-02254-9

Language: English

Publisher: Springer Science and Business Media LLC

Publication Date: 2022

detail.hit.zdb_id: 2041675-1

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Facile production of cellulose nanofibers from raw elephant grass by an aluminum chloride-enhanced acidic deep eutectic solvent

Yuan, Jin-Chao ; Huang, Rui ; Jiang, Ling-Yan ; [et al.]

Elsevier BV ; 2023

In: International Journal of Biological Macromolecules Vol. 246 ( 2023-08), p. 125687-

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In: International Journal of Biological Macromolecules, Elsevier BV, Vol. 246 ( 2023-08), p. 125687-

Type of Medium: Online Resource

ISSN: 0141-8130

URL: Article

DOI: 10.1016/j.ijbiomac.2023.125687

Language: English

Publisher: Elsevier BV

Publication Date: 2023

detail.hit.zdb_id: 1483284-7

SSG: 12

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Application of Ultrasonic Attenuation Measurements in the Studies on Macromolecular Conformational Behaviors -Phase Behavior of the Aqueous Solution of Poly(vinyl methyl ether) Sensitive to Temperature and the Modification of the Behavior by Using Poly(ac

Wang, Gong-Zheng ; Fang, Yu ; Shang, Zhi-Yuan ; [et al.]

Wiley ; 2010

In: Chinese Journal of Chemistry Vol. 22, No. 1 ( 2010-08-26), p. 28-32

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In: Chinese Journal of Chemistry, Wiley, Vol. 22, No. 1 ( 2010-08-26), p. 28-32

Type of Medium: Online Resource

ISSN: 1001-604X

URL: Article

DOI: 10.1002/cjoc.20040220108

Language: English

Publisher: Wiley

Publication Date: 2010

detail.hit.zdb_id: 2144352-X

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