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  • 1
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 1990
    In:  FEMS Microbiology Letters Vol. 68, No. 1-2 ( 1990-03), p. 183-188
    In: FEMS Microbiology Letters, Oxford University Press (OUP), Vol. 68, No. 1-2 ( 1990-03), p. 183-188
    Type of Medium: Online Resource
    ISSN: 0378-1097
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 1990
    detail.hit.zdb_id: 1501716-3
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    American Society for Microbiology ; 2004
    In:  Clinical Microbiology Reviews Vol. 17, No. 3 ( 2004-07), p. 581-611
    In: Clinical Microbiology Reviews, American Society for Microbiology, Vol. 17, No. 3 ( 2004-07), p. 581-611
    Abstract: Phase and antigenic variation result in a heterogenic phenotype of a clonal bacterial population, in which individual cells either express the phase-variable protein(s) or not, or express one of multiple antigenic forms of the protein, respectively. This form of regulation has been identified mainly, but by no means exclusively, for a wide variety of surface structures in animal pathogens and is implicated as a virulence strategy. This review provides an overview of the many bacterial proteins and structures that are under the control of phase or antigenic variation. The context is mainly within the role of the proteins and variation for pathogenesis, which reflects the main body of literature. The occurrence of phase variation in expression of genes not readily recognizable as virulence factors is highlighted as well, to illustrate that our current knowledge is incomplete. From recent genome sequence analysis, it has become clear that phase variation may be more widespread than is currently recognized, and a brief discussion is included to show how genome sequence analysis can provide novel information, as well as its limitations. The current state of knowledge of the molecular mechanisms leading to phase variation and antigenic variation are reviewed, and the way in which these mechanisms form part of the general regulatory network of the cell is addressed. Arguments both for and against a role of phase and antigenic variation in immune evasion are presented and put into new perspective by distinguishing between a role in bacterial persistence in a host and a role in facilitating evasion of cross-immunity. Finally, examples are presented to illustrate that phase-variable gene expression should be taken into account in the development of diagnostic assays and in the interpretation of experimental results and epidemiological studies.
    Type of Medium: Online Resource
    ISSN: 0893-8512 , 1098-6618
    RVK:
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2004
    detail.hit.zdb_id: 1497041-7
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    Annual Reviews ; 2008
    In:  Annual Review of Microbiology Vol. 62, No. 1 ( 2008-10-01), p. 153-169
    In: Annual Review of Microbiology, Annual Reviews, Vol. 62, No. 1 ( 2008-10-01), p. 153-169
    Abstract: Antigen 43 (Ag43) is an abundant outer membrane protein in Escherichia coli belonging to the autotransporter family. Structure-function relationships of Ag43 proposed on the basis of experimental work and in silico analysis are discussed in context of insights derived from molecular modeling. New sequence analysis sheds light on the phylogeny of the allelic variants of the Ag43-encoding gene and identifies two distinct families that appear to be distributed between specific pathogenic and commensal isolates. The molecular mechanism that controls expression by phase variation to create population heterogeneity is discussed. Proposed roles of Ag43 expression for E. coli are summarized and the studies are put into perspective regarding the role of allelic variants, genetic background of the bacterial strain, and control of expression by phase variation. We conclude that future studies need to take into account these variables to obtain a complete understanding of the contribution of Ag43 expression to E. coli biology.
    Type of Medium: Online Resource
    ISSN: 0066-4227 , 1545-3251
    URL: Issue
    RVK:
    Language: English
    Publisher: Annual Reviews
    Publication Date: 2008
    detail.hit.zdb_id: 1470471-7
    SSG: 12
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  • 4
    In: Molecular Microbiology, Wiley, Vol. 98, No. 1 ( 2015-10), p. 175-192
    Abstract: CdiB / CdiA proteins mediate inter‐bacterial competition in a process termed contact‐dependent growth inhibition ( CDI ). Filamentous CdiA exoproteins extend from CDI + cells and bind specific receptors to deliver toxins into susceptible target bacteria. CDI has also been implicated in auto‐aggregation and biofilm formation in several species, but the contribution of CdiA –receptor interactions to these multi‐cellular behaviors has not been examined. Using E scherichia coli isolate EC 93 as a model, we show that cdiA and bamA receptor mutants are defective in biofilm formation, suggesting a prominent role for CdiA – BamA mediated cell–cell adhesion. However, CdiA also promotes auto‐aggregation in a BamA ‐independent manner, indicating that the exoprotein possesses an additional adhesin activity. Cells must express CdiA in order to participate in BamA ‐independent aggregates, suggesting that adhesion could be mediated by homotypic CdiA – CdiA interactions. The BamA ‐dependent and BamA ‐independent interaction domains map to distinct regions within the CdiA filament. Thus, CdiA orchestrates a collective behavior that is independent of its growth‐inhibition activity. This adhesion should enable ‘greenbeard’ discrimination, in which genetically unrelated individuals cooperate with one another based on a single shared trait. This kind‐selective social behavior could provide immediate fitness benefits to bacteria that acquire the systems through horizontal gene transfer.
    Type of Medium: Online Resource
    ISSN: 0950-382X , 1365-2958
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2015
    detail.hit.zdb_id: 1501537-3
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  • 5
    Online Resource
    Online Resource
    American Society for Microbiology ; 2003
    In:  Journal of Bacteriology Vol. 185, No. 23 ( 2003-12), p. 6990-6994
    In: Journal of Bacteriology, American Society for Microbiology, Vol. 185, No. 23 ( 2003-12), p. 6990-6994
    Abstract: Slipped-strand mispairing (SSM) has not been identified as a mechanism of phase variation in Escherichia coli . Using a reporter gene, we show that sequences that cause phase variation by SSM in Haemophilus influenzae also lead to phase variation when introduced onto the chromosome of E. coli, and the frequencies of switching are in the biologically relevant range. Thus, the absence of SSM-mediated phase variation in E. coli does not appear to be due to a mechanistic constraint.
    Type of Medium: Online Resource
    ISSN: 0021-9193 , 1098-5530
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2003
    detail.hit.zdb_id: 1481988-0
    SSG: 12
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  • 6
    In: Current Biology, Elsevier BV, Vol. 29, No. 21 ( 2019-11), p. 3622-3634.e5
    Type of Medium: Online Resource
    ISSN: 0960-9822
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2019
    detail.hit.zdb_id: 2019214-9
    SSG: 12
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  • 7
    In: Microbiology, Microbiology Society, Vol. 168, No. 3 ( 2022-03-31)
    Abstract: The acylation of sugars, most commonly via acetylation, is a widely used mechanism in bacteria that uses a simple chemical modification to confer useful traits. For structures like lipopolysaccharide, capsule and peptidoglycan, that function outside of the cytoplasm, their acylation during export or post-synthesis requires transport of an activated acyl group across the membrane. In bacteria this function is most commonly linked to a family of integral membrane proteins – acyltransferase-3 (AT3). Numerous studies examining production of diverse extracytoplasmic sugar-containing structures have identified roles for these proteins in O -acylation. Many of the phenotypes conferred by the action of AT3 proteins influence host colonisation and environmental survival, as well as controlling the properties of biotechnologically important polysaccharides and the modification of antibiotics and antitumour drugs by Actinobacteria. Herein we present the first systematic review, to our knowledge, of the functions of bacterial AT3 proteins, revealing an important protein family involved in a plethora of systems of importance to bacterial function that is still relatively poorly understood at the mechanistic level. By defining and comparing this set of functions we draw out common themes in the structure and mechanism of this fascinating family of membrane-bound enzymes, which, due to their role in host colonisation in many pathogens, could offer novel targets for the development of antimicrobials.
    Type of Medium: Online Resource
    ISSN: 1350-0872 , 1465-2080
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2022
    detail.hit.zdb_id: 2008736-6
    SSG: 12
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  • 8
    Online Resource
    Online Resource
    American Society for Microbiology ; 2014
    In:  Journal of Bacteriology Vol. 196, No. 15 ( 2014-08), p. 2728-2735
    In: Journal of Bacteriology, American Society for Microbiology, Vol. 196, No. 15 ( 2014-08), p. 2728-2735
    Abstract: The family of agn alleles in Escherichia coli pathovars encodes autotransporters that have been implicated in biofilm formation, autoaggregation, and attachment to cells. The alleles all have long leader RNAs preceding the Ag43 translation initiation codon. Here we present an analysis of the agn43 leader RNA from E. coli K-12. We demonstrate the presence of a rho-independent transcription terminator just 28 bp upstream of the main translation start codon and show that it is functional in vitro . Our data indicate that an as-yet-unknown mechanism of antitermination of transcription must be operative in earlier phases of growth. However, as bacterial cell cultures mature, progressively fewer transcripts are able to bypass this terminator. In the K-12 leader sequence, two in-frame translation initiation codons have been identified, one upstream and the other downstream of the transcription terminator. For optimal agn43 expression, both codons need to be present. Translation from the upstream start codon leads to increased downstream agn43 expression. Our findings have revealed two novel modes of regulation of agn43 expression in the leader RNA in addition to the previously well-characterized regulation of phase variation at the agn43 promoter.
    Type of Medium: Online Resource
    ISSN: 0021-9193 , 1098-5530
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2014
    detail.hit.zdb_id: 1481988-0
    SSG: 12
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  • 9
    In: mBio, American Society for Microbiology, Vol. 11, No. 4 ( 2020-08-25)
    Abstract: Membrane bound acyltransferase-3 (AT3) domain-containing proteins are implicated in a wide range of carbohydrate O-acyl modifications, but their mechanism of action is largely unknown. O-antigen acetylation by AT3 domain-containing acetyltransferases of Salmonella spp. can generate a specific immune response upon infection and can influence bacteriophage interactions. This study integrates in situ and in vitro functional analyses of two of these proteins, OafA and OafB (formerly F2GtrC), which display an “AT3-SGNH fused” domain architecture, where an integral membrane AT3 domain is fused to an extracytoplasmic SGNH domain. An in silico -inspired mutagenesis approach of the AT3 domain identified seven residues which are fundamental for the mechanism of action of OafA, with a particularly conserved motif in TMH1 indicating a potential acyl donor interaction site. Genetic and in vitro evidence demonstrate that the SGNH domain is both necessary and sufficient for lipopolysaccharide acetylation. The structure of the periplasmic SGNH domain of OafB identified features not previously reported for SGNH proteins. In particular, the periplasmic portion of the interdomain linking region is structured. Significantly, this region constrains acceptor substrate specificity, apparently by limiting access to the active site. Coevolution analysis of the two domains suggests possible interdomain interactions. Combining these data, we propose a refined model of the AT3-SGNH proteins, with structurally constrained orientations of the two domains. These findings enhance our understanding of how cells can transfer acyl groups from the cytoplasm to specific extracellular carbohydrates. IMPORTANCE Acyltransferase-3 (AT3) domain-containing membrane proteins are involved in O -acetylation of a diverse range of carbohydrates across all domains of life. In bacteria they are essential in processes including symbiosis, resistance to antimicrobials, and biosynthesis of antibiotics. Their mechanism of action, however, is poorly characterized. We analyzed two acetyltransferases as models for this important family of membrane proteins, which modify carbohydrates on the surface of the pathogen Salmonella enterica , affecting immunogenicity, virulence, and bacteriophage resistance. We show that when these AT3 domains are fused to a periplasmic partner domain, both domains are required for substrate acetylation. The data show conserved elements in the AT3 domain and unique structural features of the periplasmic domain. Our data provide a working model to probe the mechanism and function of the diverse and important members of the widespread AT3 protein family, which are required for biologically significant modifications of cell-surface carbohydrates.
    Type of Medium: Online Resource
    ISSN: 2161-2129 , 2150-7511
    Language: English
    Publisher: American Society for Microbiology
    Publication Date: 2020
    detail.hit.zdb_id: 2557172-2
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  • 10
    Online Resource
    Online Resource
    Elsevier BV ; 2011
    In:  Current Opinion in Microbiology Vol. 14, No. 2 ( 2011-4), p. 205-211
    In: Current Opinion in Microbiology, Elsevier BV, Vol. 14, No. 2 ( 2011-4), p. 205-211
    Type of Medium: Online Resource
    ISSN: 1369-5274
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2011
    detail.hit.zdb_id: 2019222-8
    SSG: 12
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