UID:
almafu_9960118837502883
Format:
1 online resource (xxvi, 723 pages) :
,
digital, PDF file(s).
Edition:
2nd ed.
ISBN:
0-511-73851-X
,
0-521-87710-5
,
1-282-53951-5
,
9786612539510
,
0-511-81904-8
,
0-511-71918-3
,
0-511-71963-9
,
0-511-51575-8
,
0-511-71872-1
,
0-511-51703-3
Content:
The Phylogenetic Handbook is a broad, hands on guide to theory and practice of nucleotide and protein phylogenetic analysis. This second edition includes six new chapters, covering topics such as Bayesian inference, tree topology testing and the impact of recombination on phylogenies, as well as a detailed section on molecular adaptation. The book has a stronger focus on hypothesis testing than the previous edition, with more extensive discussions on recombination analysis, detecting molecular adaptation and genealogy-based population genetics. Many chapters include elaborate practical sections, which have been updated to introduce the reader to the most recent versions of sequence analysis and phylogeny software, including BLAST, FastA, Clustal, T-coffee, Muscle, DAMBE, Tree-puzzle, Phylip, MEGA, PAUP*, IQPNNI, CONSEL, ModelTest, Prottest, PAML, HYPHY, MrBayes, BEAST, LAMARC, SplitsTree, and RDP. Many analysis tools are described by their original authors, resulting in clear explanations that constitute an ideal teaching guide for advanced-level undergraduate and graduate students.
Note:
Title from publisher's bibliographic system (viewed on 18 Jul 2016).
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Basic concepts of molecular evolution /
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Sequence databases and database searching : Theory /
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Practice /
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Multiple sequence alignment : Theory /
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Practice /
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Genetic distances and nucleotide substitution models : Theory /
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Practice /
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Phylogenetic inference based on distance methods : Theory /
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Practice /
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Phylogenetic inference using maximum likelihood methods : Theory /
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Practice / Heiko A. Schmidt,
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Bayesian phylogenetic analysis using MrBayes : Theory /
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Practice /
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Phylogeny inference based on parsimony and other methods using PAUP* : Theory /
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Practice /
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Phylogenetic analysis using protein sequences : Theory /
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Practices /
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Practice /
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Molecular clock analysis : Theory /
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Practice /
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Testing tree topologies : Theory /
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Practice /
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Natural selection and adaptation of molecular sequences /
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Estimating selection pressures on alignments of coding sequences : Theory /
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Practice /
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Introduction to recombination detection /
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Detecting and characterizing individual recombination events : Theory /
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Practice /
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The coalescent : population genetic inference using genealogies /
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Bayesian evolutionary analysis by sampling trees : Theory /
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Practice /
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Lamarc : estimating population genetic parameters from molecular data : Theory /
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Practice /
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Assessing substitution saturation with Dambe : Theory /
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Practice /
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Split networks. A tool for exploring complex evolutionary relationships in molecular data : Theory /
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Practice /
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English
Additional Edition:
ISBN 9780521877105
Additional Edition:
ISBN 0-521-73071-6
Language:
English
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