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  • Weller, Ulrich  (14)
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  • 1
    Language: English
    In: Computers and Geosciences, 2010, Vol.36(10), pp.1246-1251
    Description: For many analyses, grey scale images from X-ray tomography and other sources need to be segmented into objects and background which often is a difficult task and afflicted by an arbitrary and subjective choice of threshold values. This is especially true if the volume fraction of objects is small and the histogram becomes unimodal. Bi-level segmentation based on region growing is a promising approach to cope with the fuzzy transition zone between object and background due to the partial volume effect, but until now there is no method to properly determine the required thresholds in case of unimodality. We propose an automatic and robust technique for threshold selection based on edge detection. The method uses gradient masks which are defined as regions of interest for the determination of threshold values. Its robustness is analysed by a systematic performance test and finally demonstrated for the segmentation of pores in different soils using images from X-ray tomography.
    Keywords: Segmentation ; Thresholding ; Edge Detection ; Region Growing ; Tomography ; Geology
    ISSN: 0098-3004
    E-ISSN: 1873-7803
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  • 2
    In: New Phytologist, November 2011, Vol.192(3), pp.653-663
    Description: • Despite the importance of rhizosphere properties for water flow from soil to roots, there is limited quantitative information on the distribution of water in the rhizosphere of plants. • Here, we used neutron tomography to quantify and visualize the water content in the rhizosphere of the plant species chickpea (Cicer arietinum), white lupin (Lupinus albus), and maize (Zea mays) 12 d after planting. • We clearly observed increasing soil water contents (θ) towards the root surface for all three plant species, as opposed to the usual assumption of decreasing water content. This was true for tap roots and lateral roots of both upper and lower parts of the root system. Furthermore, water gradients around the lower part of the roots were smaller and extended further into bulk soil compared with the upper part, where the gradients in water content were steeper. • Incorporating the hydraulic conductivity and water retention parameters of the rhizosphere into our model, we could simulate the gradual changes of θ towards the root surface, in agreement with the observations. The modelling result suggests that roots in their rhizosphere may modify the hydraulic properties of soil in a way that improves uptake under dry conditions.
    Keywords: Extent Of Rhizosphere ; Modelling ; Neutron Tomography ; Rhizosphere Hydraulic Properties ; Root Water Uptake ; Soil Moisture Profile ; Water Distribution
    ISSN: 0028-646X
    E-ISSN: 1469-8137
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  • 3
    Language: English
    In: Plant and Soil, 2010, Vol.332(1), pp.163-176
    Description: Water flow from soil to plants depends on the properties of the soil next to roots, the rhizosphere. Although several studies showed that the rhizosphere has different properties than the bulk soil, effects of the rhizosphere on root water uptake are commonly neglected. To investigate the rhizosphere’s properties we used neutron radiography to image water content distributions in soil samples planted with lupins during drying and subsequent rewetting. During drying, the water content in the rhizosphere was 0.05 larger than in the bulk soil. Immediately after rewetting, the picture reversed and the rhizosphere remained markedly dry. During the following days the water content of the rhizosphere increased and after 60 h it exceeded that of the bulk soil. The rhizosphere’s thickness was approximately 1.5 mm. Based on the observed dynamics, we derived the distinct, hysteretic and time-dependent water retention curve of the rhizosphere. Our hypothesis is that the rhizosphere’s water retention curve was determined by mucilage exuded by roots. The rhizosphere properties reduce water depletion around roots and weaken the drop of water potential towards roots, therefore favoring water uptake under dry conditions, as demonstrated by means of analytical calculation of water flow to a single root.
    Keywords: Root water uptake ; Water retention curve ; Rhizosphere ; Neutron radiography ; Mucilage ; Hysteresis
    ISSN: 0032-079X
    E-ISSN: 1573-5036
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  • 4
    Language: English
    In: Vadose Zone Journal, 2012, Vol.11(3), p.0
    Description: Recently, a new approach was introduced to directly measure unsaturated hydraulic conductivity in flux-controlled experiments--the multistep flux experiment. Thereby an overshoot in matric potential h (sub m) across drainage and infiltration fronts was observed. We extended this experimental approach to simultaneously measure the volumetric water content Theta within the sample and applied the method to a sand and a clay loam soil. The detailed trajectories within the h (sub m) -Theta space were obtained during a number of decreasing and increasing steps in infiltration rate. This clearly demonstrates the type and magnitude of hydraulic nonequilibrium under transient conditions where water content and matric potential deviate from a well-defined static relation. We also compared the directly measured hydraulic conductivities with those obtained from classical multistep outflow experiments and found that nonequilibrium dynamics might lead to an underestimation of hydraulic conductivity when obtained from an inverse solution of Richards" equation. We provide a qualitative explanation of nonequilibrium that depends on the structure of the material and the type and magnitude of external forcing. The new experimental setup is considered to be a valuable tool to actually quantify nonequilibrium effects. This will make it possible to represent this relevant phenomenon in future modeling concepts.
    Keywords: Hydrogeology ; Aquifers ; Climate Forcing ; Discharge ; Drainage ; Experimental Studies ; Ground Water ; Hydraulic Conductivity ; Hydrodynamics ; Hysteresis ; Infiltration ; Models ; Richards Equation ; Saturation ; Soil Mechanics ; Solute Transport ; Transport ; Unsaturated Zone;
    ISSN: Vadose Zone Journal
    E-ISSN: 1539-1663
    Source: CrossRef
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  • 5
    Language: English
    In: Journal of Plant Nutrition and Soil Science, 06/2011, Vol.174(3), pp.395-403
    ISSN: Journal of Plant Nutrition and Soil Science
    E-ISSN: 14368730
    E-ISSN: 15222624
    Source: Wiley (via CrossRef)
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  • 6
    Language: English
    In: Geoderma, 01 June 2018, Vol.319, pp.132-141
    Description: Irrigation with treated waste water (TWW) is a common practice in agriculture, mainly in arid and semiarid areas as it provides a sustainable water resource available at all-season in general and at freshwater shortage in particular. However, TWW still contains abundant organic material which is known to decrease soil wettability, which in turn may promote flow instabilities that lead to the formation of preferential flow paths. We investigate the impact of long-term TWW irrigation on water wettability and infiltration into undisturbed soil cores from two commercially used orchards in Israel. Changes of water content during infiltration were quantitatively analysed by X-ray radiography. One orchard (sandy clay loam) had been irrigated with TWW for more than thirty years. In the other orchard (loamy sand) irrigation had been changed from freshwater to TWW in 2008 and switched back in some experimental plots to freshwater in 2012. Undisturbed soil cores were taken at the end of the dry and the rainy season to investigate the seasonal effect on water repellency and on infiltration dynamics in the laboratory. The irrigation experiments were done on field moist samples. A test series with different initial water contents was run to detect the influence on water movement at different wettabilities. In this study we show that the infiltration front stability is dependent on the history of waste water irrigation at the respective site and on the initial water content.
    Keywords: Soil Water Repellency ; Treated Waste Water Irrigation ; Unstable Flow ; Preferential Flow ; Water Infiltration ; X-Ray Analysis ; Agriculture
    ISSN: 0016-7061
    E-ISSN: 1872-6259
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  • 7
    Language: English
    In: Vadose Zone Journal, 01 March 2018, Vol.17(1)
    Description: X-ray radiography is a suitable approach to study water dynamics in undisturbed soil. However, beam hardening impairs the deduction of soil moisture changes from X-ray attenuation, especially when studying infiltration of water into cylindrical soil columns. We developed a calibration protocol to correct for beam hardening effects that enables the quantitative determination of changing average water content in two-dimensional projections. The method works for a broad range of materials and is easy to implement. Moreover, we studied the drift of X-ray attenuation values due to the detector latency and eliminated its contribution to the quantitative analysis. Finally we could visualize the dynamics of infiltrating water into undisturbed cylindrical soil samples.
    Keywords: Agriculture
    ISSN: 1539-1663
    E-ISSN: 1539-1663
    Source: Directory of Open Access Journals (DOAJ)
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  • 8
    Language: English
    In: Vadose Zone Journal, 2011, Vol.10(2), p.654
    Description: The unsaturated hydraulic conductivity function is the dominant material property for modeling soil water dynamics. Because it is difficult to measure directly, it is often derived from the water retention characteristic combined with a geometric model of the pore space. In this study, we developed an automated, simple multistep flux (MSF) experiment to directly measure unsaturated conductivities, K(psi (sub m) ), at a number of water potentials, psi (sub m) , using the experimental setup of classical multistep outflow (MSO) experiments. In contrast to the MSO experiment, the MSF experiment measures the conductivity directly at a spatially constant water potential assuming macroscopically homogeneous materials. Additionally, the proposed method reveals the hysteresis of K(psi (sub m) ) with respect to increasing and decreasing water potentials as well as the temporal dynamics of K(psi (sub m) ) during transient-flow conditions. This temporal behavior is explained by the dynamics of fluid configurations at the pore scale during drainage and imbibition leading to hydraulic nonequilibrium. It may provoke a systematic underestimation of hydraulic conductivity using inverse optimization of K(psi (sub m) ) based on classical MSO experiments. The new approach will improve the determination of K(psi (sub m) ) and it provides an experimental tool to quantify the effects of hydraulic nonequilibrium under transient conditions.
    Keywords: Hydrogeology ; Experimental Studies ; Geometry ; Ground Water ; Hydraulic Conductivity ; Hysteresis ; Inverse Problem ; Mathematical Methods ; Measurement ; Models ; Movement ; Optimization ; Phase Equilibria ; Soils ; Unsaturated Zone;
    ISSN: Vadose Zone Journal
    E-ISSN: 1539-1663
    Source: CrossRef
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  • 9
    Language: English
    In: Vadose Zone Journal, 2014, Vol.13(8), p.0
    Description: Root system architecture and associated root–soil interactions exhibit large changes over time. Nondestructive methods for the quantification of root systems and their temporal development are needed to improve our understanding of root activity in natural soils. X-ray computed tomography (X-ray CT) was used to visualize and quantify growth of a single Vicia faba L. root system during a drying period. The plant was grown under controlled conditions in a sandy soil mixture and imaged every second day. Minkowski functionals and Euclidean distance transform were used to quantify root architectural traits. We were able to image the root system with water content decreasing from 29.6 to 6.75%. Root length was slightly underestimated compared with destructive measurements. Based on repeated measurements over time it was possible to quantify the dynamics of root growth and the demography of roots along soil depth. Measurement of Euclidean distances from any point within the soil to the nearest root surface yielded a frequency distribution of travel distances for water and nutrients towards roots. Our results demonstrate that a meaningful quantitative characterization of root systems and their temporal dynamics is possible.
    Keywords: Agriculture;
    ISSN: Vadose Zone Journal
    E-ISSN: 1539-1663
    Source: CrossRef
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  • 10
    Language: English
    In: Vadose Zone Journal, 2011, Vol.10(3), p.988
    Description: Recent studies have shown that rhizosphere hydraulic properties may differ from those of the bulk soil. Specifically, mucilage at the root-soil interface may increase the rhizosphere water holding capacity and hydraulic conductivity during drying. The goal of this study was to point out the implications of such altered rhizosphere hydraulic properties for soil-plant water relations. We addressed this problem through modeling based on a steady-rate approach. We calculated the water flow toward a single root assuming that the rhizosphere and bulk soil were two concentric cylinders having different hydraulic properties. Based on our previous experimental results, we assumed that the rhizosphere had higher water holding capacity and unsaturated conductivity than the bulk soil. The results showed that the water potential gradients in the rhizosphere were much smaller than in the bulk soil. The consequence is that the rhizosphere attenuated and delayed the drop in water potential in the vicinity of the root surface when the soil dried. This led to increased water availability to plants, as well as to higher effective conductivity under unsaturated conditions. The reasons were two: (i) thanks to the high unsaturated conductivity of the rhizosphere, the radius of water uptake was extended from the root to the rhizosphere surface; and (ii) thanks to the high soil water capacity of the rhizosphere, the water depletion in the bulk soil was compensated by water depletion in the rhizosphere. We conclude that under the assumed conditions, the rhizosphere works as an optimal hydraulic conductor and as a reservoir of water that can be taken up when water in the bulk soil becomes limiting.
    Keywords: Agriculture;
    ISSN: Vadose Zone Journal
    E-ISSN: 1539-1663
    Source: CrossRef
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