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  • 1
    In: Environmental Microbiology, June 2016, Vol.18(6), pp.1988-2000
    Description: Phosphorus () is an important macronutrient for all biota on earth but similarly a finite resource. Microorganisms play on both sides of the fence as they effectively mineralize organic and solubilize precipitated forms of soil phosphorus but conversely also take up and immobilize . Therefore, we analysed the role of microbes in two beech forest soils with high and low content by direct sequencing of metagenomic deoxyribonucleic acid. For inorganic solubilization, a significantly higher microbial potential was detected in the ‐rich soil. This trait especially referred to  olibacter usiatus, likewise one of the dominating species in the data sets. A higher microbial potential for efficient phosphate uptake systems () was detected in the ‐depleted soil. Genes involved in starvation response regulation (, ) were prevalent in both soils. This underlines the importance of effective phosphate (ho) regulon control for microorganisms to use alternative sources during phosphate limitation. Predicted genes were primarily harboured by hizobiales, ctinomycetales and cidobacteriales.
    Keywords: Soil Microbiology – Analysis ; Nucleic Acids – Analysis ; Phosphates – Analysis ; Forest Soils – Analysis ; Soil Phosphorus – Analysis;
    ISSN: 1462-2912
    E-ISSN: 1462-2920
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  • 2
    In: Environmental Microbiology, September 2016, Vol.18(8), pp.2767-2767
    Description: Byline: Fabian Bergkemper, Anne Scholer, Marion Engel, Friederike Lang, Jaane Kruger, Michael Schloter, Stefanie Schulz ***** No abstract is available for this article. *****
    Keywords: Recycling ; Forest Soils ; Soil Microbiology;
    ISSN: 1462-2912
    E-ISSN: 1462-2920
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  • 3
    Language: English
    In: Journal of Microbiological Methods, June 2016, Vol.125, pp.91-97
    Description: Phosphorus (P) is of central importance for cellular life but likewise a limiting macronutrient in numerous environments. Certainly microorganisms have proven their ability to increase the phosphorus bioavailability by mineralization of organic-P and solubilization of inorganic-P. On the other hand they efficiently take up P and compete with other biota for phosphorus. However the actual microbial community that is associated to the turnover of this crucial macronutrient in different ecosystems remains largely anonymous especially taking effects of seasonality and spatial heterogeneity into account. In this study seven oligonucleotide primers are presented which target genes coding for microbial acid and alkaline phosphatases ( , ), phytases ( ), phosphonatases ( ) as well as the quinoprotein glucose dehydrogenase ( ) and different P transporters ( , ). Illumina amplicon sequencing of soil genomic DNA underlined the high rate of primer specificity towards the respective target gene which usually ranged between 98% and 100% ( : 87%). As expected the primers amplified genes from a broad diversity of distinct microorganisms. Using DNA from a beech dominated forest soil, the highest microbial diversity was detected for the alkaline phosphatase ( ) gene which was amplified from 15 distinct phyla respectively 81 families. Noteworthy the primers also allowed amplification of from 6 fungal orders. The genes coding for acid phosphatase ( ) and the quinoprotein glucose dehydrogenase ( ) were amplified from 20 respectively 17 different microbial orders. In comparison the phytase and phosphonatase ( , ) primers covered 13 bacterial orders from 2 different phyla respectively. Although the amplified microbial diversity was apparently limited both primers reliably detected all orders that contributed to the P turnover in the investigated soil as revealed by a previous metagenomic approach. Genes that code for microbial P transporter ( , ) were amplified from 13 respectively 9 distinct microbial orders. Accordingly the introduced primers represent a valuable tool for further analysis of the microbial community involved in the turnover of phosphorus in soils but most likely also in other environments.
    Keywords: Phosphorus Turnover ; Forest Soil ; Phod ; Phon ; Appa ; Pita ; Psts ; Biology
    ISSN: 0167-7012
    E-ISSN: 1872-8359
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  • 4
    Language: English
    In: Journal of Microbiological Methods, September 2016, Vol.128, pp.66-68
    Description: In an inter-laboratory trial, gaseous (“CFE”) and liquid fumigation (“Resin”) based methods for measuring microbial phosphorus (P ) were compared, based on the analysis of soil samples from five forests, which differ in their P stocks. Both methods reliably detected the same P gradient in the different soils. However, when the individual recovery rates of spiked P were taken into account, the “CFE” based methods consistently generated higher P values (factor 2) compared to the “Resin” based approaches.
    Keywords: Microbial Phosphorus ; Microbial Biomass ; Gaseous Fumigation ; Liquid Fumigation ; Forest Soils ; Biology
    ISSN: 0167-7012
    E-ISSN: 1872-8359
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