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  • International Union of Crystallography (IUCr)  (4)
  • 1
    Online Resource
    Online Resource
    International Union of Crystallography (IUCr) ; 2015
    In:  Acta Crystallographica Section D Biological Crystallography Vol. 71, No. 4 ( 2015-04-01), p. 779-789
    In: Acta Crystallographica Section D Biological Crystallography, International Union of Crystallography (IUCr), Vol. 71, No. 4 ( 2015-04-01), p. 779-789
    Abstract: Tandem duplications and fusions of single genes have led to magnificent expansions in the divergence of protein structures and functions over evolutionary timescales. One of the possible results is polydomain enzymes with interdomain cooperativities, few examples of which have been structurally characterized at the full-length level to explore their innate synergistic mechanisms. This work reports the crystal structures of a double-domain phosphagen kinase in both apo and ligand-bound states, revealing a novel asymmetric L-shaped arrangement of the two domains. Unexpectedly, the interdomain connections are not based on a flexible hinge linker but on a rigid secondary-structure element: a long α-helix that tethers the tandem domains in relatively fixed positions. Besides the connective helix, the two domains also contact each other directly and form an interdomain interface in which hydrogen bonds and hydrophobic interactions further stabilize the L-shaped domain arrangement. Molecular-dynamics simulations show that the interface is generally stable, suggesting that the asymmetric domain arrangement crystallographically observed in the present study is not a conformational state simply restrained by crystal-packing forces. It is possible that the asymmetrically arranged tandem domains could provide a structural basis for further studies of the interdomain synergy.
    Type of Medium: Online Resource
    ISSN: 1399-0047
    Language: Unknown
    Publisher: International Union of Crystallography (IUCr)
    Publication Date: 2015
    detail.hit.zdb_id: 2020492-9
    detail.hit.zdb_id: 2968623-4
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  • 2
    Online Resource
    Online Resource
    International Union of Crystallography (IUCr) ; 2018
    In:  Journal of Applied Crystallography Vol. 51, No. 6 ( 2018-12-01), p. 1633-1640
    In: Journal of Applied Crystallography, International Union of Crystallography (IUCr), Vol. 51, No. 6 ( 2018-12-01), p. 1633-1640
    Abstract: The biological small-angle X-ray scattering (BioSAXS) beamline (BL19U2) at the Shanghai Synchrotron Radiation Facility, China, is dedicated exclusively to small-angle scattering experiments for biological macromolecules in solution. With recent advances in data-analysis algorithms and X-ray detectors, SAXS becomes an ideal complementary technique to other structural and biophysical methods, but it can also be applied alone to obtain important structural information. Owing to the increasing interest in solution scattering studies from the biological community, the workload on BL19U2 has steadily risen. A major upgrade of BL19U2 was performed to improve the beamline data quality, to enrich the possible sample environments and to provide a user-friendly interface. These upgrades involved the major components of BL19U2, including the optical system (slits, beamstop), the electronics, the control and acquisition software, and the sample environments, which resulted in improvements to the collected angular range in BL19U2. These upgrades have significantly broadened the scope of macromolecule size (from kilodaltons to gigadaltons) analysed at the beamline. The dedicated BL19U2 BioSAXS beamline now offers fully automated data-collection and remote-control possibilities. These developments have paved the way for high-throughput studies that generate significant quantities of structure information over a short period of time.
    Type of Medium: Online Resource
    ISSN: 1600-5767
    Language: Unknown
    Publisher: International Union of Crystallography (IUCr)
    Publication Date: 2018
    detail.hit.zdb_id: 2020879-0
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  • 3
    Online Resource
    Online Resource
    International Union of Crystallography (IUCr) ; 2006
    In:  Acta Crystallographica Section F Structural Biology and Crystallization Communications Vol. 62, No. 4 ( 2006-04-01), p. 335-339
    In: Acta Crystallographica Section F Structural Biology and Crystallization Communications, International Union of Crystallography (IUCr), Vol. 62, No. 4 ( 2006-04-01), p. 335-339
    Type of Medium: Online Resource
    ISSN: 1744-3091
    Language: Unknown
    Publisher: International Union of Crystallography (IUCr)
    Publication Date: 2006
    detail.hit.zdb_id: 2175956-X
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  • 4
    Online Resource
    Online Resource
    International Union of Crystallography (IUCr) ; 2016
    In:  Journal of Applied Crystallography Vol. 49, No. 5 ( 2016-10-01), p. 1428-1432
    In: Journal of Applied Crystallography, International Union of Crystallography (IUCr), Vol. 49, No. 5 ( 2016-10-01), p. 1428-1432
    Abstract: The beamline BL19U2 is located in the Shanghai Synchrotron Radiation Facility (SSRF) and is its first beamline dedicated to biological material small-angle X-ray scattering (BioSAXS). The electrons come from an undulator which can provide high brilliance for the BL19U2 end stations. A double flat silicon crystal (111) monochromator is used in BL19U2, with a tunable monochromatic photon energy ranging from 7 to 15 keV. To meet the rapidly growing demands of crystallographers, biochemists and structural biologists, the BioSAXS beamline allows manual and automatic sample loading/unloading. A Pilatus 1M detector (Dectris) is employed for data collection, characterized by a high dynamic range and a short readout time. The highly automated data processing pipeline SASFLOW was integrated into BL19U2, with help from the BioSAXS group of the European Molecular Biology Laboratory (EMBL, Hamburg), which provides a user-friendly interface for data processing. The BL19U2 beamline was officially opened to users in March 2015. To date, feedback from users has been positive and the number of experimental proposals at BL19U2 is increasing. A description of the new BioSAXS beamline and the setup characteristics is given, together with examples of data obtained.
    Type of Medium: Online Resource
    ISSN: 1600-5767
    Language: Unknown
    Publisher: International Union of Crystallography (IUCr)
    Publication Date: 2016
    detail.hit.zdb_id: 2020879-0
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