Kooperativer Bibliotheksverbund

Berlin Brandenburg


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  • 1
    Language: English
    In: Journal of Plant Nutrition and Soil Science, August 2016, Vol.179(4), pp.472-480
    Description: Among several environmental factors shaping soil microbial communities the impact of soil nutrients is of special interest. While continuous application mainly of N and P dramatically shifts community composition during fertilization, it remains unclear whether this effect is consistent in generic, unfertilized beech forest ecosystems of Germany, where differences in nutrient contents are mostly a result of the parental material and climatic conditions. We postulate that in such ecosystems nutrient effects are less pronounced due to the possibility of the soil microbiome to adapt to the corresponding conditions over decades and the vegetation acts as the major driver. To test this hypothesis, we investigated the bacterial community composition in five different German beech dominated forest soils, representing a natural gradient of total‐ and easily available mineral‐P. A community fingerprinting approach was performed using terminal‐Restriction Fragment Length Polymorphism analysis of the 16S rRNA gene, while abundance of bacteria was measured applying quantitative real‐time PCR. Bacterial communities at the five forest sites were distinctly separated, with strongest differences between the end‐members of the P‐gradient. However the majority of identified microbial groups (43%) were present at all sites, forming a core microbiome independent from the differences in soil chemical properties. Especially in the P‐deficient soil the abundance of unique bacterial groups was highly increased, indicating a special adaption of the community to P limitation at this site. In this regard Correspondence Analysis elucidated that exclusively soil pH significantly affected community composition at the investigated sites. In contrast soil C, N and P contents did mainly affect the overall abundance of bacteria.
    Keywords: Core Microbiome ; Forest Soil ; Nutrient Content ; Diversity
    ISSN: 1436-8730
    E-ISSN: 1522-2624
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  • 2
    Language: English
    In: Plant and Soil, 2018, Vol.427(1), pp.71-86
    Description: Background and aims Nanoparticles and colloids affect the mobilisation and availability of phosphorus for plants and microorganisms in soils. We aimed to give a description of colloid sizes and composition from forest soil profiles and to evaluate the size-related quality of colloids for P fixation. Methods We investigated the size-dependent elemental composition and the P content of water-dispersible colloids (WDC) isolated from five German (beech-dominated) forest soil profiles of varying bulk soil P content by field-flow fractionation (FFF) coupled to various detectors. Results Three size fractions of WDC were separated: (i) nanoparticles 25 nm (NP) rich in C.sub.org, (ii) fine colloids (25 nm-240 nm; FC) composed mainly of C.sub.org, Fe and Al, probably as associations of Fe- and Al- (hydr)oxides and organic matter, and (iii) medium-sized colloids (240 nm-500 nm; MC), rich in Fe, Al and Si, indicating the presence of phyllosilicates. The P concentration in the overall WDC was up to 16 times higher compared to the bulk soil. The NP content decreased with increasing soil depth while the FC and MC showed a local maximum in the mineral topsoil due to soil acidification, although variant distributions in the subsoil were observed. NP were of great relevance for P binding in the organic surface layers, whereas FC- and MC-associated P dominated in the Ah horizon. Conclusion The nanoparticles and colloids appeared to be of high relevance as P carriers in the forest surface soils studied, regardless of the bulk soil P content.
    Keywords: Colloids ; Field-flow fractionation ; Forest soil ; Nanoparticles ; Phosphorus
    ISSN: 0032-079X
    E-ISSN: 1573-5036
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  • 3
    Language: English
    In: Journal of Microbiological Methods, June 2016, Vol.125, pp.91-97
    Description: Phosphorus (P) is of central importance for cellular life but likewise a limiting macronutrient in numerous environments. Certainly microorganisms have proven their ability to increase the phosphorus bioavailability by mineralization of organic-P and solubilization of inorganic-P. On the other hand they efficiently take up P and compete with other biota for phosphorus. However the actual microbial community that is associated to the turnover of this crucial macronutrient in different ecosystems remains largely anonymous especially taking effects of seasonality and spatial heterogeneity into account. In this study seven oligonucleotide primers are presented which target genes coding for microbial acid and alkaline phosphatases ( , ), phytases ( ), phosphonatases ( ) as well as the quinoprotein glucose dehydrogenase ( ) and different P transporters ( , ). Illumina amplicon sequencing of soil genomic DNA underlined the high rate of primer specificity towards the respective target gene which usually ranged between 98% and 100% ( : 87%). As expected the primers amplified genes from a broad diversity of distinct microorganisms. Using DNA from a beech dominated forest soil, the highest microbial diversity was detected for the alkaline phosphatase ( ) gene which was amplified from 15 distinct phyla respectively 81 families. Noteworthy the primers also allowed amplification of from 6 fungal orders. The genes coding for acid phosphatase ( ) and the quinoprotein glucose dehydrogenase ( ) were amplified from 20 respectively 17 different microbial orders. In comparison the phytase and phosphonatase ( , ) primers covered 13 bacterial orders from 2 different phyla respectively. Although the amplified microbial diversity was apparently limited both primers reliably detected all orders that contributed to the P turnover in the investigated soil as revealed by a previous metagenomic approach. Genes that code for microbial P transporter ( , ) were amplified from 13 respectively 9 distinct microbial orders. Accordingly the introduced primers represent a valuable tool for further analysis of the microbial community involved in the turnover of phosphorus in soils but most likely also in other environments.
    Keywords: Phosphorus Turnover ; Forest Soil ; Phod ; Phon ; Appa ; Pita ; Psts ; Biology
    ISSN: 0167-7012
    E-ISSN: 1872-8359
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