Journal Description
Agronomy
Agronomy
is an international, peer-reviewed, open access journal on agronomy and agroecology published monthly online by MDPI. The Spanish Society of Plant Physiology (SEFV) is affiliated with Agronomy and their members receive discounts on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubAg, AGRIS, and other databases.
- Journal Rank: JCR - Q1 (Agronomy) / CiteScore - Q1 (Agronomy and Crop Science)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 15.8 days after submission; acceptance to publication is undertaken in 2.4 days (median values for papers published in this journal in the second half of 2023).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
- Companion journals for Agronomy include: Seeds, Agrochemicals, Grasses and Crops.
Impact Factor:
3.7 (2022);
5-Year Impact Factor:
4.0 (2022)
Latest Articles
Comparative Evaluation of the Performance of the PTD and CSF Algorithms on UAV LiDAR Data for Dynamic Canopy Height Modeling in Densely Planted Cotton
Agronomy 2024, 14(4), 856; https://doi.org/10.3390/agronomy14040856 (registering DOI) - 19 Apr 2024
Abstract
This study introduces a novel methodology for the dynamic extraction of information on cotton growth in terms of height utilizing the DJI Zenmuse L1 LiDAR sensor mounted onto a DJI Matrice 300 RTK Unmanned Aerial Vehicle (UAV), aimed at enhancing the precision and
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This study introduces a novel methodology for the dynamic extraction of information on cotton growth in terms of height utilizing the DJI Zenmuse L1 LiDAR sensor mounted onto a DJI Matrice 300 RTK Unmanned Aerial Vehicle (UAV), aimed at enhancing the precision and efficiency of growth monitoring within the realm of precision agriculture. Employing the Progressive TIN Densification (PTD) and Cloth Simulation Filter (CSF) algorithms, combined with Kriging interpolation, we generated Canopy Height Models (CHMs) to extract the cotton heights at two key agricultural sites: Zengcheng and Tumxuk. Our analysis reveals that the PTD algorithm significantly outperforms the CSF method in terms of accuracy, with its R2 values indicating a superior model fit for height extraction across different growth stages (Zengcheng: 0.71, Tumxuk: 0.82). Through meticulous data processing and cluster analysis, this study not only identifies the most effective algorithm for accurate height extraction but also provides detailed insights into the dynamic growth patterns of cotton varieties across different geographical regions. The findings highlight the critical role of UAV remote sensing in enabling large-scale, high-precision monitoring of crop growth, which is essential for the optimization of agricultural practices such as precision fertilization and irrigation. Furthermore, the study demonstrates the potential of UAV technology to select superior cotton varieties by analyzing their growth dynamics, offering valuable guidance for cotton breeding and cultivation.
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(This article belongs to the Section Precision and Digital Agriculture)
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Evaluation of Maize Hybrids for Resistance to Ear Rot Caused by Dominant Fusarium Species in Northeast China
by
Zhoujie Ma, Jianjun Wang, Shenghui Wen, Jiankai Ren, Hongyan Hui, Yufei Huang, Junwei Yang, Bianping Zhao, Bo Liu and Zenggui Gao
Agronomy 2024, 14(4), 855; https://doi.org/10.3390/agronomy14040855 (registering DOI) - 19 Apr 2024
Abstract
Ear rot caused by the Fusarium species has led to a decline in maize yield and kernel quality worldwide. The changes in the population structure of pathogens and the widespread planting of susceptible maize varieties have exacerbated the occurrence and harm of ear
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Ear rot caused by the Fusarium species has led to a decline in maize yield and kernel quality worldwide. The changes in the population structure of pathogens and the widespread planting of susceptible maize varieties have exacerbated the occurrence and harm of ear rot in China. Therefore, it is very important to establish the species composition of Fusarium and evaluate the resistance of the main cultivated hybrids. In this study, 366 single conidial isolates of Fusarium spp. were obtained from three provinces of Northeast China. F. verticillioides, F. subglutinans, F. proliferatum, F. oxysporum, and F. graminearum species complex (FGSC) were identified, with F. verticillioides being the most prevalent with a frequency of 44.0%. Based on the TEF-1α gene sequences analysis, the FGSC populations consisted of two independent species: F. boothii and F. graminearum, which account for 23.8% and 5.7% of the total isolates, respectively. Additionally, the resistance to ear rot by 97 maize hybrids commonly planted in Northeast China was evaluated by inoculation with F. verticillioides during 2021 and 2022. The results showed that the disease parameters of different hybrids varied significantly (p < 0.05). Approximately half of the hybrids had damage rates ranging from 0 to 15%, and 79.4% of the hybrids had a severity rating of less than 5.5. In total, 49 (50.5%) hybrids were rated as moderately resistant, which was the dominant resistance category, and 71 hybrids (73.2%) were identified as moderately to highly resistant to ear rot. Current research confirms that Fusarium ear rot in maize is mainly caused by F. verticillioides in Northeast China, and many hybrids are resistant to the disease. This study will guide growers to scientifically deploy resistant commercial hybrids to control ear rot.
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(This article belongs to the Special Issue Research Progress on Pathogenicity of Fungi in Crops—2nd Edition)
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Advancing Crop Yield Predictions: AQUACROP Model Application in Poland’s JECAM Fields
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Ewa Panek-Chwastyk, Ceren Nisanur Ozbilge, Katarzyna Dąbrowska-Zielińska and Radosław Gurdak
Agronomy 2024, 14(4), 854; https://doi.org/10.3390/agronomy14040854 (registering DOI) - 19 Apr 2024
Abstract
This study, employing the AquaCrop model, demonstrated notable efficacy in assessing and predicting crop yields for winter wheat, maize, winter rapeseed, and sugar beets in the Joint Experiment for Crop Assessment and Monitoring (JECAM) test area of Poland from 2018 to 2023. In-situ
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This study, employing the AquaCrop model, demonstrated notable efficacy in assessing and predicting crop yields for winter wheat, maize, winter rapeseed, and sugar beets in the Joint Experiment for Crop Assessment and Monitoring (JECAM) test area of Poland from 2018 to 2023. In-situ measurements, conducted through field campaigns, included parameters such as electromagnetic radiation reflectance, Leaf Area Index (LAI), soil moisture, accumulated photosynthetically active radiation, chlorophyll content, and plant development phase. The model was calibrated with input data covering daily climatic parameters from the ERA5-land Daily Aggregated repository, crop details, and soil characteristics. Specifically, for winter wheat, the Root Mean Square Error (RMSE) values ranged from 1.92% to 14.26% of the mean yield per hectare. Maize cultivation showed RMSE values ranging from 0.21% to 1.41% of the mean yield per hectare. Winter rapeseed exhibited RMSE values ranging from 0.58% to 17.15% of the mean yield per hectare. In the case of sugar beets, the RMSE values ranged from 0.40% to 1.65% of the mean yield per hectare. Normalized Difference Vegetation Index (NDVI)-based predictions showed higher accuracy for winter wheat, similar accuracy for maize and sugar beets, but lower accuracy for winter rapeseed compared to Leaf Area Index (LAI). The study contributes valuable insights into agricultural management practices and facilitates decision-making processes for farmers in the region.
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(This article belongs to the Section Precision and Digital Agriculture)
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Diversifying the UK Agrifood System: A Role for Neglected and Underutilised Crops
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Sayed N. Azam-Ali, Peter J. Gregory and Ebrahim Jahanshiri
Agronomy 2024, 14(4), 853; https://doi.org/10.3390/agronomy14040853 (registering DOI) - 19 Apr 2024
Abstract
Supply chain disruptions, a pandemic, and war in Ukraine have exposed faultlines in a globalised food system that depends on a few staple crops grown in a few exporting regions and transported to consumers around the world. In the UK, just three crops,
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Supply chain disruptions, a pandemic, and war in Ukraine have exposed faultlines in a globalised food system that depends on a few staple crops grown in a few exporting regions and transported to consumers around the world. In the UK, just three crops, (wheat, barley, and oilseed rape), account for 75 per cent of the UK’s 4.5 million hectares of arable land whilst the country imports around half its food—nearly 40 per cent—from just four EU countries (The Netherlands, Ireland, Germany, and France). Poor diets contribute to one in seven deaths in the UK, 63 per cent of the population is overweight or obese and health inequality is increasing between the poorest and most affluent regions. The food security and health of the UK population is therefore dependent on a small number of locally grown crops, vulnerable supply chains, and an unhealthy, obesogenic diet. The UK food system must diversify if it is to become food and nutritionally secure, meet its climate and biodiversity goals and have a healthy and active population. Climate-resilient and nutritious underutilised crops can help diversify the UK agrifood system, but research and investment in them is sporadic, piecemeal, and unfocused. In this paper, we compare two approaches to identifying potentially suitable underutilised crops for the UK. The first, based on UK Department for Environment, Food and Rural Affairs (Defra) Project CH0224, was delivered through literature and database searches and the expertise of growers, advisers, breeders, seed suppliers, processors, traders, and researchers. The second used the CropBASE digital knowledge base for underutilised crops. The two approaches produced no single crop that was common to both shortlists. We propose that the analytical and predictive tools derived from CropBASE could be combined with local knowledge and expertise from the Defra project to provide a common framework for the identification of underutilised crops that are best suited to local UK circumstances now and in climates of the future.
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Open AccessArticle
Evaluation of Quinoa Varieties for Adaptability and Yield Potential in Low Altitudes and Correlation with Agronomic Traits
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Peng Tang, Aixia Ren, Zhijun Jiang, Rongzhen Wang, Kaiyuan Cui, Xiangyun Wu, Min Sun, Zhiqiang Gao and Sumera Anwar
Agronomy 2024, 14(4), 852; https://doi.org/10.3390/agronomy14040852 (registering DOI) - 19 Apr 2024
Abstract
The research conducted at the Shanxi Agricultural University’s Quinoa Experimental Model Base in Jinzhong, Shanxi Province, aimed to assess agronomic traits and their correlation with yield across 32 quinoa varieties. Three distinct yield categories emerged: low (≤1500 kg ha−1), middle (1500–2500
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The research conducted at the Shanxi Agricultural University’s Quinoa Experimental Model Base in Jinzhong, Shanxi Province, aimed to assess agronomic traits and their correlation with yield across 32 quinoa varieties. Three distinct yield categories emerged: low (≤1500 kg ha−1), middle (1500–2500 kg−1), and high (>2500 kg ha−1). High-yielding varieties demonstrated notable characteristics, including decreased plant height and increased leaf area per plant at maturity compared to low- and middle-yielding varieties. Moreover, the decline in leaf area per plant and root traits from flowering to maturity was less pronounced in the high-yielding varieties. The high-yielding varieties had a higher hardness of the stem base and middle stem by 12–13.7% and 6.3–11.5% compared to the medium- and low-yield varieties. Furthermore, high-yielding varieties indicated improvements in dry matter accumulation, decreased effective branch number, and increased main ear length and 1000-grain weight. Correlation analysis highlighted significant relationships between grain weight, yield, post-flowering senescence, and root and leaf characteristics. Structural equation model analysis revealed the negative impact of certain root and leaf traits on grain weight and yield, suggesting their importance in determining productivity. Notably, high-yielding varieties exhibited traits conducive to increased grain weight, including shorter plant height, slower root senescence, and enhanced post-flowering leaf resilience. These findings showed that understanding the relationship between agronomic traits and yield potential is crucial for optimizing quinoa production and promoting the sustainable development of this essential crop.
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(This article belongs to the Section Crop Breeding and Genetics)
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In-Depth Characterization of Crown Gall Disease of Tobacco in Serbia
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Renata Iličić, Aleksandra Jelušić, Goran Barać, Dušan Nikolić, Nemanja Stošić, Marco Scortichini and Tatjana Popović Milovanović
Agronomy 2024, 14(4), 851; https://doi.org/10.3390/agronomy14040851 - 19 Apr 2024
Abstract
In August 2020, the unusual appearance of crown gall symptoms was observed on the tobacco plants (hybrid PVH2310) grown in fields in the Golubinci (Srem district, Serbia) locality. The causal agent isolated from galls located on tobacco roots formed circular, convex, and glistening
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In August 2020, the unusual appearance of crown gall symptoms was observed on the tobacco plants (hybrid PVH2310) grown in fields in the Golubinci (Srem district, Serbia) locality. The causal agent isolated from galls located on tobacco roots formed circular, convex, and glistening light blue colonies, and then dark to olive-green-colored bacterial colonies on a semi-selective D1 medium. Molecular analysis based on multiplex PCR and multi-locus sequence analysis (MLSA) using concatenated sequences of the atpD, dnaK, glnA, and rpoB genes as well as 16S rRNA identified Serbian tobacco isolates such as Agrobacterium tumefaciens (biovar 1). Two duplex PCR methods confirmed the presence of the virD2 and virC genes in tobacco isolates. Pathogenicity tests performed on carrot discs and squash fruits resulted in tumor/gall formation after 12 to 16 days post inoculation, respectively. Pathogenicity was also confirmed on tobacco plants, where isolates caused tumor development 21−25 days after inoculation. API 50 CH generated results regarding the biochemical features of the Serbian tobacco isolates. As A. tumefaciens (biovar 1) as a cause of tobacco crown gall has previously been documented solely in Japan, there is presently no data on its wider occurrence. Therefore, this first detailed investigation of A. tumefaciens isolated from naturally infected tobacco in Serbia will contribute to a better understanding of it at the global level.
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(This article belongs to the Special Issue Diseases of Herbaceous Plants)
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The Effects of Soybean–Tea Intercropping on the Photosynthesis Activity of Tea Seedlings Based on Canopy Spectral, Transcriptome and Metabolome Analyses
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Xiaojiang Li, Yang Xu, Yilin Mao, Shuangshuang Wang, Litao Sun, Jiazhi Shen, Xiuxiu Xu, Yu Wang and Zhaotang Ding
Agronomy 2024, 14(4), 850; https://doi.org/10.3390/agronomy14040850 - 18 Apr 2024
Abstract
Intercropping soybean in tea plantations is a sustainable cultivation system that can improve the growing environment of tea plants compared to monoculture tea. However, the effects of this system on the photosynthesis activity of tea seedlings have yet to be reported. Therefore, we
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Intercropping soybean in tea plantations is a sustainable cultivation system that can improve the growing environment of tea plants compared to monoculture tea. However, the effects of this system on the photosynthesis activity of tea seedlings have yet to be reported. Therefore, we used tea cultivar ‘Zhongcha108’ as experimental materials to investigate the effects of intercropping soybean on the canopy spectral parameters and photosynthesis activity of tea seedlings. Canopy spectral reflectance data showed that soybean–tea intercropping (STS) improved the reflectance of 720, 750 and 840 nm bands in tea seedlings’ canopy. The vegetation indexes (VIs) value related to photosynthetic pigments in STS was obviously higher than monoculture tea (T). In addition, the Fv/Fm and SPAD value in STS were also clearly higher. Transcriptome analysis data indicated that STS induced the expression of light-harvesting complex (LHC) genes, photosystem subunit (Psbs and Psas) genes and dark reaction biological process genes (FBP1, RPE, Calvin cycle protein CP12-1 and transketolase). These results indicate that STS enhanced the photosynthesis activity. The metabolome analysis showed that STS promoted the accumulation of carbohydrate metabolites, which further provided evidence for the enhancement of photosynthesis in the leaves of tea seedlings. This study enhanced our understanding of how intercropping soybeans in a young tea plantation improves the photosynthesis activity to promote tea seedlings’ growth and development.
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(This article belongs to the Special Issue Beverage Crops Breeding: For Wine, Tea, Juices, Cocoa and Coffee)
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Alternating Partial Root-Zone Subsurface Drip Irrigation Enhances the Productivity and Water Use Efficiency of Alfalfa by Improving Root Characteristics
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Qunce Sun, Shuzhen Zhang, Xianwei Peng, Xingyu Ge, Binghan Wen, Zhipeng Jiang, Yuxiang Wang and Bo Zhang
Agronomy 2024, 14(4), 849; https://doi.org/10.3390/agronomy14040849 - 18 Apr 2024
Abstract
Water scarcity is one of the significant constraints on sustainable agricultural development in arid and semi-arid regions. The challenges faced in forage production are even more severe than those encountered with general crops. The industry still struggles to achieve water-efficient, high-yield quality forage
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Water scarcity is one of the significant constraints on sustainable agricultural development in arid and semi-arid regions. The challenges faced in forage production are even more severe than those encountered with general crops. The industry still struggles to achieve water-efficient, high-yield quality forage in water-scarce pastoral areas. This study focuses on alfalfa, a high-quality forage crop, employing a combination of “subsurface drip irrigation (SDI) + alternate partial root-zone irrigation (APRI)” and establishing three water supply gradients (full irrigation, 75% deficit, 50% deficit), in comparison with the widely used subsurface drip irrigation, to study the effects of two irrigation methods and three moisture gradients on alfalfa. The aim is to provide some theoretical basis and data support for achieving water-saving and high-yield quality forage in water-scarce pastoral areas. The main findings are as follows: First, compared with SDI, the two-year alternate dry and wet environment provided by alternate partial root-zone drip irrigation (ARDI) significantly increased the specific root length, specific surface area, and root length density of alfalfa at 20~40 cm depth, increasing by 33.3~76.8%, 6.4~32.97%, and 15.2~93.9%, respectively, compared to SDI. Under ARDI irrigation, the alfalfa root system has a greater contact area with the soil, which lays a solid foundation for the water and nutrient supply needed for the accumulation of its above-ground biomass. Secondly, over the two-year production process, the plant height of alfalfa under ARDI treatment was 12~14.5% higher than that under SDI, the total fresh forage yield was 43.5~64% higher, and the total dry forage yield was 23.2~33.8% higher than SDI. Under ARDI, the 75% water deficit treatment could still maintain the plant height and stem thickness of alfalfa compared to full irrigation with SDI and increased the dry forage yield by 6.6% without significantly reducing the quality, significantly enhancing the productive performance of alfalfa. Moreover, during the two years of production and utilization, the nutritional quality of alfalfa under the ARDI irrigation mode did not significantly decrease compared to SDI, maintaining the stable nutritional quality of alfalfa over multiple years of production. Lastly, thanks to the improved root system and increased yield of alfalfa under ARDI irrigation, and based on this, its water evapotranspiration did not significantly increase compared to SDI; the annual average Alfalfa Water Productivity Index (AWPI) and Alfalfa Water Productivity of Crop (AWPC) under ARDI irrigation increased by 28.8% and 37.2%, respectively, improving the water use efficiency of alfalfa production. In summary, in the production of alfalfa in water-scarce pastoral areas, ARDI and its water deficit treatment have more potential for water-saving than SDI as a water-saving irrigation strategy.
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(This article belongs to the Section Water Use and Irrigation)
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Breeding Soft Durum Wheat through Introgression of the T5AL·5VS Translocated Chromosome
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Wen Li, Yi Wei, Yinyu Jin, Heyu Chen, Lingna Kong, Xiaoxue Liu, Liping Xing, Aizhong Cao and Ruiqi Zhang
Agronomy 2024, 14(4), 848; https://doi.org/10.3390/agronomy14040848 - 18 Apr 2024
Abstract
The limited culinary utilizations of durum wheat (Triticum turgidum ssp. durum) are partly related to its very hard kernel texture, which is due to the softness genes Puroindoline a (Pina) and Puroindoline b (Pinb) on the Hardness
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The limited culinary utilizations of durum wheat (Triticum turgidum ssp. durum) are partly related to its very hard kernel texture, which is due to the softness genes Puroindoline a (Pina) and Puroindoline b (Pinb) on the Hardness (Ha) locus eliminated during allopolyploid formation. A previous study has reported that the softness genes Dina/Dinb, homologous to Pina/Pinb, were located on the chromosome arm 5VS of wild species Dasypyrum villosum. In the present study, we describe the process of transferring the soft grain texture from D. villosum into durum wheat through homoeologous recombination to develop a Robertsonian translocation. A durum wheat–D. villosum T5AL·5V#5S translocation line, S1286, was developed and characterized by molecular cytogenetic analysis from BC4F2 progeny of durum cv. ZY1286/D. villosum 01I140. The translocation line S1286 exhibited a soft grain texture as evidenced by observation through an electron microscope and a Single Kernel Characterization System (SKCS) hardness value of 5.5. Additionally, a newly developed 5VS/5AS co-dominant InDel marker, LW5VS-1, facilitated the transfer of the T5AL·5V#5S translocated chromosome into diverse durum wheat backgrounds. Subsequently, the T5AL·5V#5S translocated chromosome was transferred into five high-yielding durum wheat backgrounds by backcrossing and traced using marker LW5VS-1. Compared with each recurrent parent, T5AL·5V#5S lines showed good viability, similar development, and no yield penalty. Meanwhile, a significant decrease in plant height of about 6.0% was observed when comparing T5AL·5V#5S translocation lines with their recurrent parents. Accordingly, our results provide an efficient strategy for developing soft kernel durum wheat through the combination of T5AL·5V#5S translocation and the co-dominant marker LW5VS-1, which will be crucial for meeting the future challenges of sustainable agriculture and food security.
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(This article belongs to the Section Crop Breeding and Genetics)
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Performance and Stability Analysis of Extra-Early Maturing Orange Maize Hybrids under Drought Stress and Well-Watered Conditions
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Tégawendé Odette Bonkoungou, Baffour Badu-Apraku, Victor Olawale Adetimirin, Kiswendsida Romaric Nanema and Idris Ishola Adejumobi
Agronomy 2024, 14(4), 847; https://doi.org/10.3390/agronomy14040847 - 18 Apr 2024
Abstract
The consistently low yield turnout of maize on farmers’ fields owing to drought and the nutritional challenges attributable to the consumption of white endosperm maize pose a major threat to food and nutritional security in Sub-Saharan Africa (SSA). The objectives of this study
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The consistently low yield turnout of maize on farmers’ fields owing to drought and the nutritional challenges attributable to the consumption of white endosperm maize pose a major threat to food and nutritional security in Sub-Saharan Africa (SSA). The objectives of this study were to assess the performance of newly developed extra-early maturing orange hybrids under managed drought and well-watered conditions, compare the outcomes of multiple-trait base index and multi-trait genotype–ideotype distance index selection procedures, and identify drought-tolerant hybrids with stable performance across contrasting environments for commercialization in SSA. One hundred and ninety orange hybrids and six checks were evaluated under managed drought and well-watered conditions at Ikenne for two seasons between 2021 and 2023. A 14 × 14-lattice design was used for the field evaluations under both research conditions. Drought stress was achieved by the complete withdrawal of irrigation water 25 days after planting. Results revealed significant differences among the hybrids under drought and well-watered conditions. Grain yield, ears per plant, and plant aspect under managed drought were correlated to the same traits under well-watered conditions, suggesting that the expression of these traits is governed by common genetic factors. Twenty-nine hybrids were identified as top-performing drought-tolerant hybrids by the multiple-trait base index and the multi-trait genotype–ideotype distance index. Of the selected outstanding 29 hybrids, 34% were derived from crosses involving the tester TZEEIOR 197, demonstrating the outstanding genetic potential of this inbred line. Further analysis of the 29 selected hybrids revealed TZEEIOR 509 × TZEEIOR 197 as the hybrid that combined the most drought-tolerant adaptive traits. However, the hybrids TZEEIOR 526 × TZEEIOR 97, TZEEIOR 384 × TZEEIOR 30, TZEEIOR 515 × TZEEIOR 249, TZEEIOR 510 × TZEEIOR 197, TZEEIOR 479 × TZEEIOR 197, and TZEEIOR 458 × TZEEIOR 197 were identified as the most stable hybrids across drought and well-watered conditions. These hybrids should be extensively tested in multi-location trials for deployment and commercialization in SSA.
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(This article belongs to the Collection Abiotic Stress Tolerance in Plants: Towards a Sustainable Agriculture)
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Are Hungarian Grey Cattle or Hungarian Racka Sheep the Best Choice for the Conservation of Wood-Pasture Habitats in the Pannonian Region?
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Károly Penksza, Dénes Saláta, Attila Fűrész, Péter Penksza, Márta Fuchs, Ferenc Pajor, László Sipos, Eszter Saláta-Falusi, Zsombor Wagenhoffer and Szilárd Szentes
Agronomy 2024, 14(4), 846; https://doi.org/10.3390/agronomy14040846 - 18 Apr 2024
Abstract
Wood pastures have been characteristic farming types in the Pannonian biogeographical region over the centuries. In the present work, we studied wood-pastures of typical geographical locations in the North Hungarian Mountain Range of Hungary characterized by similar environmental conditions but grazed by different
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Wood pastures have been characteristic farming types in the Pannonian biogeographical region over the centuries. In the present work, we studied wood-pastures of typical geographical locations in the North Hungarian Mountain Range of Hungary characterized by similar environmental conditions but grazed by different livestock. The sample area of Cserépfalu was grazed by Hungarian Grey Cattle, while the Erdőbénye was grazed by Hungarian Racka Sheep. Coenological records of the sites were collected from 2012 to 2021 in the main vegetation period according to the Braun-Blanquet method with the application of 2 × 2 m sampling quadrats, where the coverage estimated by percentage for each present species was also recorded. To evaluate the state of vegetation, ’ecological ordering’ distribution, diversity, and grassland management values were used. Between the two areas, the grazing pressure of the two studied livestock produced different results. Based on the diversity values, woody–shrubby–grassland mosaic diversity values were high (Shannon diversity: 2.21–2.87). Cattle grazing resulted in a variable and mosaic-like shrubby area with high cover values. Based on our results, grazing by cattle provides an adequate solution for forming and conserving wood-pasture habitats in the studied areas of Hungary. However, if the purpose is to also form valuable grassland with high grassland management values, partly sheep grazing should be suggested.
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(This article belongs to the Special Issue Vegetation Ecology and Biodiversity Conservation in Agroforestry Systems)
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Halophilic Plant Growth-Promoting Rhizobacteria as Producers of Antifungal Metabolites under Salt Stress
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Karima Ould Ouali, Karim Houali, Cristina Cruz, Juliana Melo, Yasmina Benakli, Lila Ousmer, Zahia Madani and El-Hafid Nabti
Agronomy 2024, 14(4), 845; https://doi.org/10.3390/agronomy14040845 - 18 Apr 2024
Abstract
Salinity is one of the main factors causing soil deterioration, making it unsuitable for agriculture. It is well documented that the application of halotolerant and halophilic plant growth-promoting bacteria (PGPR: plant growth-promoting rhizobacteria) with biological control activities as an inoculant of cultivated plants
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Salinity is one of the main factors causing soil deterioration, making it unsuitable for agriculture. It is well documented that the application of halotolerant and halophilic plant growth-promoting bacteria (PGPR: plant growth-promoting rhizobacteria) with biological control activities as an inoculant of cultivated plants offers a biological alternative to the use of agrochemicals, particularly when subjected to salt stress. From this perspective, 70 bacterial strains were isolated from saline soils (sebkha) in arid and semi-arid areas of Eastern Algeria. Three isolates were selected based on their ability to produce bioactive molecules allowing them to promote plant growth, such as hydrolytic enzymes, indole acetic acid (auxin-phytohormone), HCN, NH3, etc. Two of these isolates belonged to the genus Serratia and the third was a halophilic Halomonas bacteria. These bacteria were identified based on their 16S rDNA sequences. Antagonism tests against phytopathogenic fungi were carried out. The identification of the antifungal molecules produced by these bacteria was determined using high-performance liquid chromatography. These bacteria can inhibit mycelial development against phytopathogenic fungi with rates reaching 80.67% against Botrytis cinerea, 76.22% against Aspergillus niger, and 66.67% against Fusarium culmorum for Serratia sp. The strain Halomonas sp. inhibited mycelial growth through the production of volatile substances of Aspergillus niger at 71.29%, Aspergillus flavus at 75.49%, and Penicillium glabrum at a rate of 72.22%. The identification of the antifungal molecules produced by these three bacteria using HPLC revealed that they were polyphenols, which makes these strains the first rhizobacteria capable of producing phenolic compounds. Finally, pot tests to determine the effectiveness of these strains in promoting wheat growth under salinity stress (125 mM, 150 mM, and 200 mM) was carried out. The results revealed that a consortium of two isolates (Serratia sp. and Halomonas sp.) performed best at 125 mM. However, at higher concentrations, it was the halophilic bacteria Halomonas sp. that gave the best result. In all cases, there was a significant improvement in the growth of wheat seedlings inoculated with the bacteria compared to non-inoculated controls.
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(This article belongs to the Section Soil and Plant Nutrition)
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Assisted Tea Leaf Picking: The Design and Simulation of a 6-DOF Stewart Parallel Lifting Platform
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Zejun Wang, Chunhua Yang, Raoqiong Che, Hongxu Li, Yaping Chen, Lijiao Chen, Wenxia Yuan, Fang Yang, Juan Tian and Baijuan Wang
Agronomy 2024, 14(4), 844; https://doi.org/10.3390/agronomy14040844 - 18 Apr 2024
Abstract
The 6-DOF Stewart parallel elevation platform serves as the platform for mounting the tea-picking robotic arm, significantly impacting the operational scope, velocity, and harvesting precision of the robotic arm. Utilizing the Stewart setup, a parallel elevation platform with automated lifting and leveling capabilities
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The 6-DOF Stewart parallel elevation platform serves as the platform for mounting the tea-picking robotic arm, significantly impacting the operational scope, velocity, and harvesting precision of the robotic arm. Utilizing the Stewart setup, a parallel elevation platform with automated lifting and leveling capabilities was devised, ensuring precise halts at designated elevations for seamless harvesting operations. The effectiveness of the platform parameter configuration and the reasonableness of the posture changes were verified. Firstly, the planting mode and growth characteristics of Yunnan large-leaf tea trees were analyzed to determine the preset path, posture changes, and mechanism stroke of the Stewart parallel lifting platform, thereby determining the basic design specifications of the platform. Secondly, a 3D model was established using SolidWorks, a robust adaptive PD control model was built using MATLAB for simulation, and dynamic calculations were carried out through data interaction in Simulink and ADAMS. Finally, the rationality of the lifting platform design requirements was determined based on simulation data, a 6-DOF Stewart parallel lifting platform was manufactured, and a motion control system was built for experimental verification according to the design specifications and simulation data. The results showed that the maximum deviation angle around the X, Y, and Z axes was 10°, the maximum lifting distance was 15 cm, the maximum load capacity was 60 kg, the platform response error was within ±0.1 mm, and the stable motion characteristics reached below the millimeter level, which can meet the requirements of automated operation of the auxiliary picking robotic arm.
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(This article belongs to the Special Issue AI, Sensors and Robotics for Smart Agriculture—2nd Edition)
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Open AccessArticle
Variations in Protein and Gene Expression Involved in the Pathways of Carbohydrate, Abscisic Acid, and ATP-Binding Cassette Transporter in Soybean Roots under Drought Stress
by
Xiaoqin Yang, Xiyan Cui, Jiageng Chang, Jianan Wang, Yujue Wang, Haoye Liu, Yan Wang, Yanbo Chen, Yuhan Yang, Dan Yao, Fengjie Sun and Ying Zhou
Agronomy 2024, 14(4), 843; https://doi.org/10.3390/agronomy14040843 - 18 Apr 2024
Abstract
Plant roots play crucial roles in their response to drought conditions. However, the molecular responses in soybean roots to drought stress remain unclear. We investigated the alterations in the protein expression in the roots of a drought-resistant soybean cultivar ‘Jiyu 47’ during the
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Plant roots play crucial roles in their response to drought conditions. However, the molecular responses in soybean roots to drought stress remain unclear. We investigated the alterations in the protein expression in the roots of a drought-resistant soybean cultivar ‘Jiyu 47’ during the seedling phase based on tandem mass tag (TMT) proteomics analysis. The results revealed significant variations in the expression of the proteins involved in several metabolic pathways in soybean roots, including sucrose metabolism, abscisic acid (ABA) metabolism, and the ATP-binding cassette (ABC) transporter pathway. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses revealed a coordinated expression pattern of the proteins involved in the various cellular pathways responding to drought stress in soybean. The increased production of sucrose and betaine enhanced the inhibition of the damage caused by reactive oxygen species (ROS) and the tolerance of drought stress. The results of the physiological variations showed that sucrose metabolism, ABA metabolic mechanism, and the ABC transporter pathways played an important role in the antioxidant defense system in response to drought stress in soybean roots. The results of quantitative real-time PCR revealed the up-regulated expression of three genes (i.e., GmPYR1, GmHO-1, and GmSOD) involved in ABA biosynthesis and the signaling pathway. This study provides novel insights into the comprehension of the molecular pathways regulating the soybean root response to drought stress.
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(This article belongs to the Special Issue Advances in Environmental Stress Biology: From Omics Approaches)
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Open AccessArticle
An Optimized Protocol for Comprehensive Evaluations of Salt Tolerance in Crop Germplasm Accessions: A Case Study of Tomato (Solanum lycopersicum L.)
by
Zheng Chen, Xin Li, Rong Zhou, Enmei Hu, Xianghan Peng, Fangling Jiang and Zhen Wu
Agronomy 2024, 14(4), 842; https://doi.org/10.3390/agronomy14040842 - 17 Apr 2024
Abstract
The comprehensive evaluation of crop germplasm serves to scientifically and objectively assess the quality of different genetic accessions against certain standards. Here, we propose an optimized approach to enhance the result’s stability when assessing salt tolerance in crop germplasm. This protocol was applied
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The comprehensive evaluation of crop germplasm serves to scientifically and objectively assess the quality of different genetic accessions against certain standards. Here, we propose an optimized approach to enhance the result’s stability when assessing salt tolerance in crop germplasm. This protocol was applied to a case study involving 249 tomato genotypes, systematically refining the processes involved in constructing an evaluation index system, data preprocessing, statistical method selection, and weight calculation. The optimization process reduced the system variance of salt tolerance evaluation results and achieved an 85.42% concordance with a classical approach, across a tomato population covering 241 genotypes, suggesting the improved stability and high accuracy of the optimized protocol. Moreover, an 83.82% consistency rate between pre- and post-optimization results also suggested the high accuracy of the optimized protocol. The enhanced stability was further confirmed by a secondary validation on a subpopulation (covering 39 genotypes), which demonstrated a consistency rate of 83.87% between the two populations. The study identified 8.43% of the evaluated germplasm as salt-tolerant accessions, providing valuable parental materials for breeding programs. The findings underscore the potential of our protocol for the precise identification of stress-resistant germplasm, contributing to the development of stress-tolerant crop varieties.
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(This article belongs to the Special Issue Cultivation Physiology, Molecular Biology and Molecular Breeding of Solanaceae)
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Open AccessArticle
Deep Soil Water Availability Regulates the Transpiration of Afforested Apple Trees (Malus pumila Mill.) in a Sub-Humid Loess Region
by
Peng Li, Yuxiao Zuo, Xuemei Zhang, Yinglei Wang, Zhengli Wu, Xiaoyu Liu, Nan Wu, Yanwei Lu, Huijie Li and Bingcheng Si
Agronomy 2024, 14(4), 841; https://doi.org/10.3390/agronomy14040841 - 17 Apr 2024
Abstract
Many studies have investigated how soil water availability in shallow soil affects forest transpiration, but how deep soil water status (below 1 m depth) alters tree water use remains poorly understood. To improve our understanding of how deep soil water changes tree transpiration
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Many studies have investigated how soil water availability in shallow soil affects forest transpiration, but how deep soil water status (below 1 m depth) alters tree water use remains poorly understood. To improve our understanding of how deep soil water changes tree transpiration dynamics, we measured soil water content (SWC) in more than 20 m depths, the radial sap flow profile and the leaf area index (LAI) in the 2017 growing season in 9-, 12-, 16-, 19- and 23-year-old afforested apple (Rosaceae) trees on the Chinese Loess Plateau. SWC was also measured in long-term cultivated farmland to derive SWC before afforestation. The results showed that there was no statistical difference in SWC in shallow soil among orchards (p > 0.05), while SWC in deep soil reduced rapidly with increasing tree age. The average SWC at 1–20 m decreased from 0.27 ± 0.02 cm3 cm−3 in farmland to 0.21 ± 0.03 cm3 cm−3 in the 23-year-old orchard. Moreover, water storage in deep soil decreased by 139 mm yr−1 between the 9- and 12-year-old stands, 105 mm yr−1 between the 12- and 16-year-old stands, 44 mm yr−1 between the 16- and 19-year-old stands, and 9 mm yr−1 from the 19- to 23-year-old stands, indicating that gradually decreased SWC in deep soil has restricted tree water use. Due to the changes in SWC, growing-season transpiration and the LAI peaked in the 16-year-old orchard and then decreased with increasing stand age. Growing-season transpiration in the 23-year-old orchard was only 77% of that in the 16-year stands, despite the older trees having larger diameters at the breast height. Our results suggest that soil water availability in deep soil plays an important role in regulating trees’ transpiration.
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(This article belongs to the Section Water Use and Irrigation)
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Open AccessReview
Brassinosteroids: Relevant Evidence Related to Mitigation of Abiotic and Biotic Stresses in Plants
by
Aminthia Pombo Sudré da Silva, Antônio André da Silva Alencar, Cláudia Pombo Sudré, Maria do Socorro Bezerra de Araújo and Allan Klynger da Silva Lobato
Agronomy 2024, 14(4), 840; https://doi.org/10.3390/agronomy14040840 - 17 Apr 2024
Abstract
Extreme events of climate change are increasing, such as droughts and heat waves, causing limitations on growth and yield in relevant food crops, as well as threatening global food security. Brassinosteroids (BRs) are natural or synthetic steroids with significant properties that promote plant
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Extreme events of climate change are increasing, such as droughts and heat waves, causing limitations on growth and yield in relevant food crops, as well as threatening global food security. Brassinosteroids (BRs) are natural or synthetic steroids with significant properties that promote plant growth and development. In the current world scenario, research and solutions that can improve plant tolerance to climate change are strategic to ensure food security. The distinctiveness and novelty of this review lie in its comprehensive and detailed approach to the role of BRs in plants under biotic and abiotic stresses. We consolidate information on the action mechanisms on specific organs, providing detailed experimental conclusions of these plant growth regulators, including also commercial products and concentrations tested aiming to mitigate the adverse effects of the stresses. This practical approach highlights the potential of BRs in agriculture and plant protection against stresses. Additionally, our review presents results with plant models and essential food crops, focusing on multidisciplinary approaches and using physiological, biochemical, nutritional, anatomical and agronomic tools to explain the mechanisms of action of brassinosteroids in plants exposed to abiotic and biotic stresses.
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(This article belongs to the Special Issue Regulatory Mechanism of Growth Regulators on Crop Growth and Development)
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Open AccessArticle
Prediction Models of Growth Characteristics and Yield for Chinese Winter Wheat Based on Machine Learning
by
Fangliang Liu, Lijun Su, Pengcheng Luo, Wanghai Tao, Quanjiu Wang and Mingjiang Deng
Agronomy 2024, 14(4), 839; https://doi.org/10.3390/agronomy14040839 - 17 Apr 2024
Abstract
In order to eliminate the limitations of traditional winter wheat yield prediction methods, the prediction models based on machine learning are used to improve the accuracy of winter wheat yield prediction. In this study, by collecting a large amount of domestic literature about
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In order to eliminate the limitations of traditional winter wheat yield prediction methods, the prediction models based on machine learning are used to improve the accuracy of winter wheat yield prediction. In this study, by collecting a large amount of domestic literature about wheat growth characteristics, the irrigation amount, fertilization amount, soil nutrient status, planting density, maximum leaf area index (LAImax), maximum aboveground dry matter accumulation (Dmax) and yield (Y) were chosen to develop the learning models. Using the data of the irrigation amount, fertilization amount, soil nutrient status and planting density as the training set, the regression prediction models (Gaussian process regression mode, linear regression model, regression tree mode and support vector machine model) were used to train and learn the data of the LAImax, Dmax and Y, respectively. The results show that the Gaussian regression model has the best precision compared to the other models. The coefficients of determination (R2) of the learning results of the Gaussian regression model for the LAImax, Dmax and Y are 0.9, 0.93 and 0.86, and the root mean square error (RMSE) is 0.57, 1125.1 and 640.41. Based on the data of the irrigation amount, nitrogen application amount, potassium application amount, phosphorus application amount, organic matter content, total nitrogen content, alkali-hydrolyzable nitrogen content, available phosphorus content, available potassium content and planting density, the method proposed in this paper can reliably predict the LAImax, the Dmax and Y of winter wheat. The results also have certain reference significance for the yield prediction of other crops.
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(This article belongs to the Section Precision and Digital Agriculture)
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The Musa Marker Database: A Comprehensive Genomic Resource for the Improvement of the Musaceae Family
by
Manosh Kumar Biswas, Dhiman Biswas, Ganjun Yi and Guiming Deng
Agronomy 2024, 14(4), 838; https://doi.org/10.3390/agronomy14040838 - 17 Apr 2024
Abstract
Molecular markers, including Simple Sequence Repeat (SSR), Single Nucleotide Polymorphism (SNP), and Intron Length Polymorphism (ILP), are widely utilized in crop improvement and population genetics studies. However, these marker resources remain insufficient for Musa species. In this study, we developed genome-wide SSR, SNP,
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Molecular markers, including Simple Sequence Repeat (SSR), Single Nucleotide Polymorphism (SNP), and Intron Length Polymorphism (ILP), are widely utilized in crop improvement and population genetics studies. However, these marker resources remain insufficient for Musa species. In this study, we developed genome-wide SSR, SNP, and ILP markers from Musa and its sister species, creating a comprehensive molecular marker repository for the improvement of Musa species. This database contains 2,115,474 SSR, 63,588 SNP, and 91,547 ILP markers developed from thirteen Musa species and two of its relative species. We found that 77% of the SSR loci are suitable for marker development; 38% of SNP markers originated from the genic region, and transition mutations (C↔T; A↔G) were more frequent than transversion. The database is freely accessible and follows a ‘three-tier architecture,’ organizing marker information in MySQL tables. It has a user-friendly interface, written in JavaScript, PHP, and HTML code. Users can employ flexible search parameters, including marker location in the chromosome, transferability, polymorphism, and functional annotation, among others. These distinctive features distinguish the Musa Marker Database (MMdb) from existing marker databases by offering a novel approach that is tailored to the precise needs of the Musa research community. Despite being an in silico method, searching for markers based on various attributes holds promise for Musa research. These markers serve various purposes, including germplasm characterization, gene discovery, population structure analysis, and QTL mapping.
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(This article belongs to the Special Issue Fruits Crops Improvements in View of Marker Development, Genetic Diversity, Population Structure Traits Tagging and GWAS)
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The Influence of Different, Long-Term Fertilizations on the Chemical and Spectroscopic Properties of Soil Organic Matter
by
Jerzy Weber, Lilla Mielnik, Peter Leinweber, Edyta Hewelke, Andrzej Kocowicz, Elżbieta Jamroz and Marek Podlasiński
Agronomy 2024, 14(4), 837; https://doi.org/10.3390/agronomy14040837 - 17 Apr 2024
Abstract
Currently, revealing soil management strategies that store the maximum atmospheric CO2 in the soil is a major issue. This is best explored by investigating long-term experiments, like the Skierniewice (Poland) field trial, established in 1921 on sandy loam Luvisol. In this trial,
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Currently, revealing soil management strategies that store the maximum atmospheric CO2 in the soil is a major issue. This is best explored by investigating long-term experiments, like the Skierniewice (Poland) field trial, established in 1921 on sandy loam Luvisol. In this trial, the variants analyzed included control (CON), manure (MAN), legumes (LEG), and manure + legumes (MAN + LEG). Soil samples from the A horizon were analyzed for total organic carbon (TOC), carbon content of humic acids (HA), fulvic acids (FA), and humin (HUM), as well as for spectroscopic properties of bulk soil and isolated HUM. Compared to the control, all other treatments caused an increase in TOC, while the application of manure resulted in an increase in the amount of HUM. Legume application caused an increase in UV-Vis absorbance and fluorescence emission. Thermochemolysis and gas chromatography/mass spectrometry showed that HUM was enriched in carbohydrates in almost all pairs of soil and HUM. Compared to the CON, the largest proportion of carbohydrate in HUM was found in MAN + LEG. Different long-term soil management strategies not only altered TOC, but also, surprisingly, the chemical composition of HUM, which is considered to be particularly stable and a long-term sink of atmospheric carbon.
Full article
(This article belongs to the Topic Soil Fertility and Plant Nutrition for Sustainable Agriculture)
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