Structural and Functional Characterization of the BcsG Subunit of the Cellulose Synthase in Salmonella typhimurium

https://doi.org/10.1016/j.jmb.2018.07.008Get rights and content

Highlights

  • BcsG subunit of cellulose synthase is required for full-scale cellulose production.

  • BcsG affects cellulose production via at least two distinct molecular mechanisms.

  • Transmembrane part of BcsG is required for proper production of the BcsA subunit.

  • The periplasmic domain of BcsG has the alkaline phosphatase superfamily structure.

  • Crystal structure of the BcsG periplasmic domain shows a single active-site Zn ion.

Abstract

Many bacteria secrete cellulose, which forms the structural basis for bacterial multicellular aggregates, termed biofilms. The cellulose synthase complex of Salmonella typhimurium consists of the catalytic subunits BcsA and BcsB and several auxiliary subunits that are encoded by two divergently transcribed operons, bcsRQABZC and bcsEFG. Expression of the bcsEFG operon is required for full-scale cellulose production, but the functions of its products are not fully understood. This work aimed to characterize the BcsG subunit of the cellulose synthase, which consists of an N-terminal transmembrane fragment and a C-terminal domain in the periplasm. Deletion of the bcsG gene substantially decreased the total amount of BcsA and cellulose production. BcsA levels were partially restored by the expression of the transmembrane segment, whereas restoration of cellulose production required the presence of the C-terminal periplasmic domain and its characteristic metal-binding residues. The high-resolution crystal structure of the periplasmic domain characterized BcsG as a member of the alkaline phosphatase/sulfatase superfamily of metalloenzymes, containing a conserved Zn2+-binding site. Sequence and structural comparisons showed that BcsG belongs to a specific family within alkaline phosphatase-like enzymes, which includes bacterial Zn2+-dependent lipopolysaccharide phosphoethanolamine transferases such as MCR-1 (colistin resistance protein), EptA, and EptC and the Mn2+-dependent lipoteichoic acid synthase (phosphoglycerol transferase) LtaS. These enzymes use the phospholipids phosphatidylethanolamine and phosphatidylglycerol, respectively, as substrates. These data are consistent with the recently discovered phosphoethanolamine modification of cellulose by BcsG and show that its membrane-bound and periplasmic parts play distinct roles in the assembly of the functional cellulose synthase and cellulose production.

Introduction

Bacterial cellulose, an exopolysaccharide with versatile biological roles, is produced by a variety of phylogenetically diverse bacteria [1]. In many of them, cellulose is required for biofilm formation that mediates environmental persistence, stress protection, and an anti-virulence phenotype [2], [3], [4], [5]. Cellulose production is also important for microbial cell–cell interactions including bacterial–fungal interactions, adherence to surfaces, slowing-down of cell motility, interaction with amyloid fibers and protection against disinfectants [6], [7], [8], [9], [10]. Cellulose is a seemingly simple biopolymer that consists of glucose monomers bound into linear β-(1–4)-glucan chains and is resistant against hydrolysis by alkali and most strong acids. Despite this simple structure, biosynthesis of cellulose in different bacteria is carried out by at least three distinct operon classes, which are characterized by different auxiliary and accessory genes [1], [11], [12], [13], [14] to produce macromolecules of amazingly different properties.

The core genes of all characterized cellulose biosynthesis operons code for the cellulose synthase catalytic subunit BcsA, an inner-membrane protein with a cytosolic domain containing the active site, which together with BcsB, a periplasmic protein with a single BcsA-interacting C-terminal transmembrane (TM) domain, forms the enzymatically active cellulose synthase (Fig. S1; [15], [16], [17]). The active site of BcsA is blocked by a gating loop and requires second messenger cyclic diguanosine monophosphate (c-di-GMP) binding to the C-terminal PilZ domain to allow substrate access. In addition, bcsZ gene, encoding a periplasmic endoglucanase, is typically located either within the cellulose biosynthesis operon or in close vicinity [5]. Further on, bcsC, a gene predicted to encode an outer membrane pore, is part of class I and II bcs operons [1]. The function of various accessory genes, often specific to certain cellulose biosynthesis operons, is starting to become unraveled. For example, in class II operons that are found in many beta- and gamma-proteobacteria, the bcsEFG operon is adjacent to the bcsABZC operon. BcsE was recently shown to be a novel c-di-GMP receptor required for optimal cellulose biosynthesis in Salmonella enterica serovar Typhimurium (hereafter S. typhimurium) and Escherichia coli [18]. Bacterial two-hybrid assays have shown a strong interaction of the E. coli BcsG with the cellulose synthase subunit BcsA and the BcsF protein [13], [19]. Mutating the bcsG gene in E. coli and Salmonella. resulted in severely disturbed cellulose synthesis, indicating a role of this protein in maintaining wild-type levels of cellulose [13], [18], [20]. More recently, BcsG was shown to participate in a chemical modification of the growing glucan chain in E. coli and S. typhimurium that results in production of cellulose with a phosphoethanolamine group added to every other glucosyl residue [19].

In this work, we further investigate the role(s) of the BcsG protein in cellulose biosynthesis and report the high-resolution crystal structure of its periplasmic domain. The crystal structure confirms that this domain is a member of the alkaline phosphatase/sulfatase (AlkP) enzyme superfamily, related to the membrane-anchored phosphoethanolamine and phosphoglycerol transferases. Mutational analyses demonstrated that the Ser278 residue, which is conserved in the BcsG family, is required for the catalytic activity of BcsG in vitro and optimal cellulose biosynthesis in vivo. However, the protein scaffold is required for production of wild type levels of the cellulose synthase subunit BcsA. Thus, this work shows that BcsG is a multifunctional protein with at least two functions involved not only in transfer of a phosphoethanolamine headgroup from phospholipids, but also in maintenance of inner-membrane protein production.

Section snippets

Functional characterization of BcsG

We reported recently that a polar bcsE mutant of S. typhimurium lacking the biofilm extracellular matrix component curli fimbriae (ΔcsgBA mutant) displayed a smooth and nearly white (saw) colony morphotype when grown in the presence of the Congo red dye on salt-free LB agar plates (CR plates) [18]. Such a phenotype is consistent with a lack of cellulose production [6], [18]. By contrast, a non-polar bcsE mutant in this ΔcsgBA background displayed a clearly diminished, but still prominent pdar (p

Discussion

Production of bacterial cellulose in the fruit-degrading organism Komagataeibacter (formerly Acetobacter, Gluconacetobacter) xylinus has traditionally been investigated as an experimentally tractable model for the biosynthesis of cellulose in plants [62], [63], [64]. Today we know that cellulose is produced by numerous bacteria from different branches of the phylogenetic tree, including members of the family Enterobacteriaceae [6], [65]. Bacterial cellulose biosynthesis operons code for a

Bacterial strains, plasmids, and growth conditions

The bacterial strains and plasmids used in this study are listed in Table S1. E. coli and S. typhimurium was routinely grown on Luria–Bertani (LB) agar plates or in LB liquid culture supplemented with appropriate antibiotics at 37 °C overnight. The antibiotics used were ampicillin (100 μg mL1), kanamycin (30 μg mL 1), and chloramphenicol (20 μg mL 1). For the expression of genes, 0.1% arabinose was used.

Construction of mutants

The deletion mutant of bcsG was constructed by one-step gene inactivation as described [85]

Acknowledgments

We gratefully acknowledge access to the Protein Science Facility, Karolinska Institutet, Stockholm, Sweden. We appreciate the assistance of Mark Gomelsky in initial protein purification and Sulman Shafeeq in microscopic analysis. Lei Sun and Fengyang Li received a scholarship from the Chinese Scholarship Council. Annika Cimdins was funded by the German Research Foundation (CI 239/1-1 and CI 239/2-1). This work was supported by the Röntgen-Ångström Cluster through the Swedish Research Council to

References (99)

  • V. Agarwal et al.

    Structural and mechanistic insights into C–P bond hydrolysis by phosphonoacetate hydrolase

    Chem. Biol.

    (2011)
  • M. Nukui et al.

    Structure and molecular mechanism of Bacillus anthracis cofactor-independent phosphoglycerate mutase: a crucial enzyme for spores and growing cells of Bacillus species

    Biophys. J.

    (2007)
  • M.W. Nowicki et al.

    Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass

    J. Mol. Biol.

    (2009)
  • T.D. Panosian et al.

    Bacillus cereus phosphopentomutase is an alkaline phosphatase family member that exhibits an altered entry point into the catalytic cycle

    J. Biol. Chem.

    (2011)
  • J.E. Coleman

    Zinc enzymes

    Curr. Opin. Chem. Biol.

    (1998)
  • M. Kumar et al.

    Plant cellulose synthesis: CESA proteins crossing kingdoms

    Phytochemistry

    (2015)
  • U. Römling

    Molecular biology of cellulose production in bacteria

    Res. Microbiol.

    (2002)
  • W. Fiedler et al.

    Characterization of an Escherichia coli mdoB mutant strain unable to transfer sn-1-phosphoglycerol to membrane-derived oligosaccharides

    J. Biol. Chem.

    (1985)
  • C.M. Reynolds et al.

    A phosphoethanolamine transferase specific for the outer 3-deoxy-d-manno-octulosonic acid residue of Escherichia coli lipopolysaccharide. Identification of the eptB gene and Ca2 + hypersensitivity of an eptB deletion mutant

    J. Biol. Chem.

    (2005)
  • Z.D. Dalebroux et al.

    Delivery of cardiolipins to the Salmonella outer membrane is necessary for survival within host tissues and virulence

    Cell Host Microbe

    (2015)
  • I. Kempf et al.

    Colistin use and colistin resistance in bacteria from animals

    Int. J. Antimicrob. Agents

    (2016)
  • K.Y. Zhang et al.

    Combining constraints for electron-density modification

    Methods Enzymol.

    (1997)
  • A.G. Matthysse

    Role of bacterial cellulose fibrils in Agrobacterium tumefaciens infection

    J. Bacteriol.

    (1983)
  • M. Robledo et al.

    Role of Rhizobium endoglucanase CelC2 in cellulose biosynthesis and biofilm formation on plant roots and abiotic surfaces

    Microb. Cell Factories

    (2012)
  • M.H. Pontes et al.

    Salmonella promotes virulence by repressing cellulose production

    Proc. Natl. Acad. Sci. U. S. A.

    (2015)
  • I. Ahmad et al.

    BcsZ inhibits biofilm phenotypes and promotes virulence by blocking cellulose production in Salmonella enterica serovar Typhimurium

    Microb. Cell Factories

    (2016)
  • X. Zogaj et al.

    The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix

    Mol. Microbiol.

    (2001)
  • C. Solano et al.

    Genetic analysis of Salmonella enteritidis biofilm formation: critical role of cellulose

    Mol. Microbiol.

    (2002)
  • N. Grantcharova et al.

    Bistable expression of CsgD in biofilm development of Salmonella enterica serovar Typhimurium

    J. Bacteriol.

    (2010)
  • M.T. Brandl et al.

    Salmonella biofilm formation on Aspergillus niger involves cellulose—chitin interactions

    PLoS One

    (2011)
  • V. Zorraquino et al.

    Coordinated cyclic-di-GMP repression of Salmonella motility through YcgR and cellulose

    J. Bacteriol.

    (2013)
  • I.M. Saxena et al.

    Identification of a second cellulose synthase gene (acsAII) in Acetobacter xylinum

    J. Bacteriol.

    (1995)
  • A.J. Spiers et al.

    Biofilm formation at the air–liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose

    Mol. Microbiol.

    (2003)
  • P.V. Krasteva et al.

    Insights into the structure and assembly of a bacterial cellulose secretion system

    Nat. Commun.

    (2017)
  • K. Maeda et al.

    Genetic identification of factors for extracellular cellulose accumulation in the thermophilic cyanobacterium Thermosynechococcus vulcanus: proposal of a novel tripartite secretion system

    Mol. Microbiol.

    (2018)
  • J.L. Morgan et al.

    Crystallographic snapshot of cellulose synthesis and membrane translocation

    Nature

    (2013)
  • J.L. Morgan et al.

    Mechanism of activation of bacterial cellulose synthase by cyclic di-GMP

    Nat. Struct. Mol. Biol.

    (2014)
  • J.T. McNamara et al.

    A molecular description of cellulose biosynthesis

    Annu. Rev. Biochem.

    (2015)
  • X. Fang et al.

    GIL, a new c-di-GMP-binding protein domain involved in regulation of cellulose synthesis in enterobacteria

    Mol. Microbiol.

    (2014)
  • W. Thongsomboon et al.

    Phosphoethanolamine cellulose: a naturally produced chemically modified cellulose

    Science

    (2018)
  • L.A. Singletary et al.

    Loss of multicellular behavior in epidemic African nontyphoidal Salmonella enterica serovar Typhimurium ST313 Strain D23580

    MBio

    (2016)
  • U. Römling et al.

    AgfD, the checkpoint of multicellular and aggregative behaviour in Salmonella typhimurium regulates at least two independent pathways

    Mol. Microbiol.

    (2000)
  • U. Römling et al.

    Multicellular and aggregative behaviour of Salmonella typhimurium strains is controlled by mutations in the agfD promoter

    Mol. Microbiol.

    (1998)
  • A. Kader et al.

    Hierarchical involvement of various GGDEF domain proteins in rdar morphotype development of Salmonella enterica serovar Typhimurium

    Mol. Microbiol.

    (2006)
  • M.Y. Galperin et al.

    A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases

    Protein Sci.

    (1998)
  • M.Y. Galperin et al.

    Conserved core structure and active site residues in alkaline phosphatase superfamily enzymes

    Proteins

    (2001)
  • A. Anandan et al.

    Structure of a lipid A phosphoethanolamine transferase suggests how conformational changes govern substrate binding

    Proc. Natl. Acad. Sci. U. S. A.

    (2017)
  • D.E. Kim et al.

    Protein structure prediction and analysis using the Robetta server

    Nucleic Acids Res.

    (2004)
  • M.Y. Galperin et al.

    A bacterial coat that is not pure cotton

    Science

    (2018)
  • Cited by (30)

    • Bacterial cellulose: Molecular regulation of biosynthesis, supramolecular assembly, and tailored structural and functional properties

      2022, Progress in Materials Science
      Citation Excerpt :

      Sun et al. determined that the BcsG subunit of CS in Salmonella typhimurium is a member of the alkaline phosphatase/sulfatase superfamily of metaloenzymes, containing an N-terminus TM fragment and a C-terminus domain located in the periplasm. The BcsG subunit also contains the conserved Zn2+-binding site [193], which was further verified in E. coli [194]. Knockdown of the bcsG gene resulted in a decreased intracellular level of BcsA protein, which led to a significant reduction in cellulose synthesis.

    • The Escherichia coli cellulose synthase subunit G (BcsG) is a Zn<sup>2+</sup>-dependent phosphoethanolamine transferase

      2020, Journal of Biological Chemistry
      Citation Excerpt :

      Based on the results presented here, we propose that EcBcsG proceeds by a similar Zn2+-dependent catalytic mechanism, making it mechanistically indistinguishable but functionally unique to the biochemically characterized pEtN transferase family members. We also demonstrate, for the first time, that the C-terminal domain of EcBcsG is sufficient for transfer of pEtN onto cellulose acceptors, which is in contrast to prior work suggesting that other members of the cellulose synthetic complex were essential for activity (i.e. BcsA, BcsB, and/or BcsE) and that BcsG may be part of a pathway that modifies intermediates (e.g. BcsA, other periplasmic proteins, peptidoglycan, or osmoregulated periplasmic glucan) instead of cellulose directly (26, 27). An understanding of BcsG-directed pEtN cellulose biosynthesis offers opportunities for structure-based drug discovery to inhibit the production of pEtN cellulose.

    • Architecture of the Cellulose Synthase Outer Membrane Channel and Its Association with the Periplasmic TPR Domain

      2019, Structure
      Citation Excerpt :

      Catalysis requires the presence of the BcsB subunit, which is anchored to the inner membrane via a C-terminal TM helix, while its periplasmic part contains two copies of a repeating unit, each containing a carbohydrate-binding and a flavodoxin-like domain (McNamara et al., 2015; Morgan et al., 2013, 2016). The third subunit associated with the IM is BcsG, a membrane-integrated phosphoethanolamine transferase (Sun et al., 2018; Thongsomboon et al., 2018). This subunit transfers a pEtN group, most likely from phosphatidyl-ethanolamine lipids, to the C6 position of approximately 50% of the polymer's glucose units to produce pEtN-cellulose (Thongsomboon et al., 2018).

    View all citing articles on Scopus

    L.S. and P.V. contributed equally to this work.

    5

    Present address: A. Cimdins, Institute of Hygiene, University of Münster, D-48149 Münster, Germany.

    View full text