In:
Chemistry – A European Journal, Wiley, Vol. 28, No. 71 ( 2022-12-20)
Abstract:
We have used NMR experiments to explore the binding of selected glycans and glycomimetics to the SARS CoV‐2 spike glycoprotein (S‐protein) and to its receptor binding domain (RBD). STD NMR experiments confirm the binding of sialoglycans to the S‐protein of the prototypic Wuhan strain virus and yield dissociation constants in the millimolar range. The absence of STD effects for sialoglycans in the presence of the Omicron/BA.1 S‐protein reflects a loss of binding as a result of S‐protein evolution. Likewise, no STD effects are observed for the deletion mutant Δ143–145 of the Wuhan S‐protein, thus supporting localization of the binding site in the N‐terminal domain (NTD). The glycomimetics Oseltamivir and Zanamivir bind weakly to the S‐protein of both virus strains. Binding of blood group antigens to the Wuhan S‐protein cannot be confirmed by STD NMR. Using 1 H, 15 N TROSY HSQC‐based chemical shift perturbation (CSP) experiments, we excluded binding of any of the ligands studied to the RBD of the Wuhan S‐protein. Our results put reported data on glycan binding into perspective and shed new light on the potential role of glycan‐binding to the S‐protein.
Type of Medium:
Online Resource
ISSN:
0947-6539
,
1521-3765
DOI:
10.1002/chem.202202614
Language:
English
Publisher:
Wiley
Publication Date:
2022
detail.hit.zdb_id:
1478547-X
